Evidence map›Paper›PMID 25464340›Full record

ArticlePLoS biology2014

Genome-wide association mapping identifies a new arsenate reductase enzyme critical for limiting arsenic accumulation in plants.

Dai-Yin Chao, Yi Chen, Jiugeng Chen, Shulin Shi, Ziru Chen, Chengcheng Wang, John M Danku, Fang-Jie Zhao, David E Salt

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 81 papers.

0numbers the graph read from it
0cells of the map it votes in
81citing papers in PubMed
19.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

81 citing papers in PubMed, 246 citations in OpenAlex.

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  9. Genome-wide association study reveals genetic loci for ten trace elements in foxtail millet (Setaria italica).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
    Article
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  17. TheInternational journal of molecular sciences · 2023
    Article
  18. Article
  19. Natural variation inHorticulture research · 2023
    Article
  20. Article

21 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Dai-Yin ChaoNational Key Laboratory of Plant Molecular Genetics (NKLPMG), Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China; Institute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen, United Kingdom.
Yi ChenSustainable Soils and Grassland Systems Department, Rothamsted Research, Harpenden, Hertfordshire, United Kingdom.
Jiugeng ChenNational Key Laboratory of Plant Molecular Genetics (NKLPMG), Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China.
Shulin ShiState Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China.
Ziru ChenNational Key Laboratory of Plant Molecular Genetics (NKLPMG), Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China; University of Chinese Academy of Sciences, Beijing, China.
Chengcheng WangState Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China.
John M DankuInstitute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen, United Kingdom.
Fang-Jie ZhaoState Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China; Rothamsted Research, Harpenden, Hertfordshire, United Kingdom.
David E SaltInstitute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen, United Kingdom.
Nanjing Agricultural University · CNChinese Academy of Sciences · CNUniversity of Aberdeen · GBCenter for Excellence in Molecular Plant Sciences · CNRothamsted Research · GB

Funding

VARIATION IN BIOACCUMULATION AND BIOMAGNIFICATION OF METALS IN NORTHERN US LAKESP42ES007373 · NIEHS · DARTMOUTH COLLEGE · PI STANTON, BRUCE A. · 1995 to 2019
$52.0M
The Genetic Basis of Natural Ionomic VariationR01GM078536 · NIGMS · PURDUE UNIVERSITY · PI GUERINOT, MARY LOU · 2007 to 2014
$2.6M
Biotechnology and Biological Sciences Research Council BB/F004087/1Biotechnology and Biological Sciences Research Council BB/H006303/1Biotechnology and Biological Sciences Research Council BB/L000113/1Biotechnology and Biological Sciences Research Council BBS/E/C/00004960NIEHS NIH HHS 2P4ES007373-19A1NIEHS NIH HHS P42 ES007373NIGMS NIH HHS 2R01GM078536NIGMS NIH HHS R01 GM078536
6 · The paper itself

Abstract

Inorganic arsenic is a carcinogen, and its ingestion through foods such as rice presents a significant risk to human health. Plants chemically reduce arsenate to arsenite. Using genome-wide association (GWA) mapping of loci controlling natural variation in arsenic accumulation in Arabidopsis thaliana allowed us to identify the arsenate reductase required for this reduction, which we named High Arsenic Content 1 (HAC1). Complementation verified the identity of HAC1, and expression in Escherichia coli lacking a functional arsenate reductase confirmed the arsenate reductase activity of HAC1. The HAC1 protein accumulates in the epidermis, the outer cell layer of the root, and also in the pericycle cells surrounding the central vascular tissue. Plants lacking HAC1 lose their ability to efflux arsenite from roots, leading to both increased transport of arsenic into the central vascular tissue and on into the shoot. HAC1 therefore functions to reduce arsenate to arsenite in the outer cell layer of the root, facilitating efflux of arsenic as arsenite back into the soil to limit both its accumulation in the root and transport to the shoot. Arsenate reduction by HAC1 in the pericycle may play a role in limiting arsenic loading into the xylem. Loss of HAC1-encoded arsenic reduction leads to a significant increase in arsenic accumulation in shoots, causing an increased sensitivity to arsenate toxicity. We also confirmed the previous observation that the ACR2 arsenate reductase in A. thaliana plays no detectable role in arsenic metabolism. Furthermore, ACR2 does not interact epistatically with HAC1, since arsenic metabolism in the acr2 hac1 double mutant is disrupted in an identical manner to that described for the hac1 single mutant. Our identification of HAC1 and its associated natural variation provides an important new resource for the development of low arsenic-containing food such as rice.

Indexed as

Genome-Wide Association StudyAmino Acid SequenceArabidopsisArabidopsis ProteinsArsenate ReductasesArsenicEpistasis, GeneticGenes, PlantGenetic LociModels, BiologicalMolecular Sequence DataPlant LeavesPlant RootsPlant ShootsReproducibility of ResultsSequence Analysis, ProteinArabidopsis ProteinsArsenate ReductasesArsenicHAC1 (HIGH ARSENIC CONTENT 1) protein, Arabidopsis

Identifiers

PMID25464340
PMCPMC4251824
OpenAlexW2153922240

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.