Evidence map›Paper›PMID 25463439›Full record

ArticleJournal of molecular biology2015

Movement of elongation factor G between compact and extended conformations.

Enea Salsi, Elie Farah, Zoe Netter, Jillian Dann, Dmitri N Ermolenko

Abstract read
In one paragraph

Article in Journal of molecular biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. eLife · 2026
    Article
  2. Multi-channel smFRET study reveals a compact conformation of EF-G on the ribosome.The international journal of biochemistry & cell biology · 2025
    Article
  3. Article
  4. Review
  5. Article
  6. Crystal Structure ofFrontiers in molecular biosciences · 2021
    Article
  7. Article
  8. Global reprogramming of virulence and antibiotic resistance inThe Journal of biological chemistry · 2020
    Article
  9. Structural basis for ribosome recycling by RRF and tRNA.Nature structural & molecular biology · 2020
    Article
  10. Spontaneous ribosomal translocation of mRNA and tRNAs into a chimeric hybrid state.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  11. New Insights into Ribosome Structure and Function.Cold Spring Harbor perspectives in biology · 2019
    Review
  12. Ribosome Structure, Function, and Early Evolution.International journal of molecular sciences · 2018
    Review
  13. Article
  14. The ribosome moves: RNA mechanics and translocation.Nature structural & molecular biology · 2017
    Article
  15. Structural insights into ribosome translocation.Wiley interdisciplinary reviews. RNA · 2016
    Review
  16. Review
  17. Elongation factor G initiates translocation through a power stroke.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  18. Review
  19. Article
  20. Structural Insights into tRNA Dynamics on the Ribosome.International journal of molecular sciences · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Enea SalsiDepartment of Biochemistry and Biophysics and Center for RNA Biology, School of Medicine and Dentistry, University of Rochester, Rochester, NY 14642, USA.
Elie FarahDepartment of Biochemistry and Biophysics and Center for RNA Biology, School of Medicine and Dentistry, University of Rochester, Rochester, NY 14642, USA.
Zoe NetterDepartment of Biochemistry and Biophysics and Center for RNA Biology, School of Medicine and Dentistry, University of Rochester, Rochester, NY 14642, USA.
Jillian DannDepartment of Biochemistry and Biophysics and Center for RNA Biology, School of Medicine and Dentistry, University of Rochester, Rochester, NY 14642, USA.
Dmitri N ErmolenkoDepartment of Biochemistry and Biophysics and Center for RNA Biology, School of Medicine and Dentistry, University of Rochester, Rochester, NY 14642, USA. Electronic address: Dmitri_Ermolenko@urmc.rochester.edu.

Funding

Structural Dynamics of TranslationR01GM099719 · NIGMS · UNIVERSITY OF ROCHESTER · PI ERMOLENKO, DMITRI · 2012 to 2020
$2.8M
NIGMS NIH HHS GM-099719NIGMS NIH HHS R01 GM099719
6 · The paper itself

Abstract

Previous structural studies suggested that ribosomal translocation is accompanied by large interdomain rearrangements of elongation factor G (EF-G). Here, we follow the movement of domain IV of EF-G relative to domain II of EF-G using ensemble and single-molecule Förster resonance energy transfer. Our results indicate that ribosome-free EF-G predominantly adopts a compact conformation that can also, albeit infrequently, transition into a more extended conformation in which domain IV moves away from domain II. By contrast, ribosome-bound EF-G predominantly adopts an extended conformation regardless of whether it is interacting with pretranslocation ribosomes or with posttranslocation ribosomes. Our data suggest that ribosome-bound EF-G may also occasionally sample at least one more compact conformation. GTP hydrolysis catalyzed by EF-G does not affect the relative stability of the observed conformations in ribosome-free and ribosome-bound EF-G. Our data support a model suggesting that, upon binding to a pretranslocation ribosome, EF-G moves from a compact to a more extended conformation. This transition is not coupled to but likely precedes both GTP hydrolysis and mRNA/tRNA translocation.

Indexed as

Protein ConformationEscherichia coliGene RearrangementPeptide Elongation Factor GRibosomesRNA, MessengerRNA, TransferSequence Analysis, DNATranslocation, GeneticPeptide Elongation Factor GRNA, MessengerRNA, Transferconformational dynamicsribosomesmFRETtRNA translocationviomycin

Identifiers

PMID25463439
PMCPMC4297505

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.