Evidence map›Paper›PMID 25457457›Full record

ArticleACS chemical biology2015

Target-based screen against a periplasmic serine protease that regulates intrabacterial pH homeostasis in Mycobacterium tuberculosis.

Nan Zhao, Crystal M Darby, Jennifer Small, Daniel A Bachovchin, Xiuju Jiang, Kristin E Burns-Huang, Helene Botella, Sabine Ehrt, Dale L Boger, Erin D Anderson and 8 more

Open access · greenAbstract read
In one paragraph

Article in ACS chemical biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. TargetingMicrobiology (Reading, England) · 2024
    Review
  3. Article
  4. AC2P20 selectively killsRSC advances · 2021
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Review
  14. The EMBO journal · 2017
    Article
  15. Review
  16. Frontiers in microbiology · 2017
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 2 institutions in 1 country.

Nan ZhaoDepartment of Microbiology and Immunology, Weill Medical College of Cornell University , 445 E 69th Street, New York, New York 10021, United States.
Crystal M Darby
Jennifer Small
Daniel A Bachovchin
Xiuju Jiang
Kristin E Burns-Huang
Helene Botella
Sabine Ehrt
Dale L Boger
Erin D Anderson
Benjamin F Cravatt
Anna E Speers
Virneliz Fernandez-Vega
Peter S Hodder
Christina Eberhart
Hugh Rosen
Timothy P Spicer
Carl F Nathan
Scripps Research Institute · USCornell University · US

Funding

UHTS Implementation(Florida)U54MH084512 · NIMH · SCRIPPS RESEARCH INSTITUTE, THE · PI ROSEN, HUGH · 2008 to 2013
$89.2M
Weill Cornell/Rockefeller/Sloan-Kettering MST ProgramT32GM007739 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI HSU, KATHARINE C · 1985 to 2023
$51.1M
pH Homeostasis in Mycobacterium tuberculosisR01AI081725 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI EHRT, SABINE · 2009 to 2013
$2.8M
NIAID NIH HHS R01 AI081725NIGMS NIH HHS T32 GM007739NIGMS NIH HHS T32GM07739NIMH NIH HHS MH084512NIMH NIH HHS U54 MH084512
6 · The paper itself

Abstract

Mycobacterium tuberculosis (Mtb) maintains its intrabacterial pH (pHIB) near neutrality in the acidic environment of phagosomes within activated macrophages. A previously reported genetic screen revealed that Mtb loses this ability when the mycobacterial acid resistance protease (marP) gene is disrupted. In the present study, a high throughput screen (HTS) of compounds against the protease domain of MarP identified benzoxazinones as inhibitors of MarP. A potent benzoxazinone, BO43 (6-chloro-2-(2'-methylphenyl)-4H-1,3-benzoxazin-4-one), acylated MarP and lowered Mtb's pHIB and survival during incubation at pH 4.5. BO43 had similar effects on MarP-deficient Mtb, suggesting the existence of additional target(s). Reaction of an alkynyl-benzoxazinone, BO43T, with Mycobacterium bovis variant bacille Calmette-Guérin (BCG) followed by click chemistry with azido-biotin identified both the MarP homologue and the high temperature requirement A1 (HtrA1) homologue, an essential protein. Thus, the chemical probe identified through a target-based screen not only reacted with its intended target in the intact cells but also implicated an additional enzyme that had eluded a genetic screen biased against essential genes.

Indexed as

HomeostasisBacterial ProteinsBenzoxazinesGene Expression Regulation, BacterialGene Expression Regulation, EnzymologicHydrogen-Ion ConcentrationMolecular ProbesMolecular StructureMycobacterium tuberculosisPeriplasmSerine ProteasesSerine Proteinase InhibitorsBacterial ProteinsBenzoxazinesMolecular ProbesSerine ProteasesSerine Proteinase Inhibitors

Identifiers

PMID25457457
PMCPMC4340348
OpenAlexW2333819824

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.