Evidence map›Paper›PMID 25457164›Full record

ArticleMolecular cell2014

The RSC complex localizes to coding sequences to regulate Pol II and histone occupancy.

Marla M Spain, Suraiya A Ansari, Rakesh Pathak, Michael J Palumbo, Randall H Morse, Chhabi K Govind

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Frontiers in epigenetics and epigenomics · 2024
    Article
  5. Histone modification inComputational and structural biotechnology journal · 2023
    Review
  6. Article
  7. Article
  8. Histone sumoylation and chromatin dynamics.Nucleic acids research · 2021
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Marla M SpainDepartment of Biological Sciences, Oakland University, Rochester, MI 48309, USA.
Suraiya A AnsariLaboratory of Molecular Genetics, Wadsworth Center, NY State Department of Health, Albany, NY 12208, USA.
Rakesh PathakDepartment of Biological Sciences, Oakland University, Rochester, MI 48309, USA.
Michael J PalumboLaboratory of Molecular Genetics, Wadsworth Center, NY State Department of Health, Albany, NY 12208, USA.
Randall H MorseLaboratory of Molecular Genetics, Wadsworth Center, NY State Department of Health, Albany, NY 12208, USA.
Chhabi K GovindDepartment of Biological Sciences, Oakland University, Rochester, MI 48309, USA. Electronic address: govind@oakland.edu.
Oakland University · USWadsworth Center · USUnited States Department of State · US

Funding

Mechanisms of RSC recruitment and its role in transcriptionR01GM095514 · NIGMS · OAKLAND UNIVERSITY · PI GOVIND, CHHABI K · 2011 to 2015
$1.5M
NIGMS NIH HHS GM095514NIGMS NIH HHS R01 GM095514
6 · The paper itself

Abstract

ATP-dependent chromatin remodelers regulate chromatin structure during multiple stages of transcription. We report that RSC, an essential chromatin remodeler, is recruited to the open reading frames (ORFs) of actively transcribed genes genome wide, suggesting a role for RSC in regulating transcription elongation. Consistent with such a role, Pol II occupancy in the ORFs of weakly transcribed genes is drastically reduced upon depletion of the RSC catalytic subunit Sth1. RSC inactivation also reduced histone H3 occupancy across transcribed regions. Remarkably, the strongest effects on Pol II and H3 occupancy were confined to the genes displaying the greatest RSC ORF enrichment. Additionally, RSC recruitment to the ORF requires the activities of the SAGA and NuA4 HAT complexes and is aided by the activities of the Pol II CTD Ser2 kinases Bur1 and Ctk1. Overall, our findings strongly implicate ORF-associated RSC in governing Pol II function and in maintaining chromatin structure over transcribed regions.

Indexed as

Chromatin Assembly and DisassemblyDNA-Binding ProteinsGene Expression Regulation, FungalHistonesOpen Reading FramesRNA Polymerase IISaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsStress, PhysiologicalTranscription FactorsTranscription, GeneticDNA-Binding ProteinsHistonesRNA Polymerase IIRSC complex, S cerevisiaeSaccharomyces cerevisiae ProteinsTranscription Factors

Identifiers

PMID25457164
PMCPMC4258446
OpenAlexW2043875696

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.