Evidence map›Paper›PMID 25457051›Full record

ArticleeLife2014

Stepwise visualization of membrane pore formation by suilysin, a bacterial cholesterol-dependent cytolysin.

Carl Leung, Natalya V Dudkina, Natalya Lukoyanova, Adrian W Hodel, Irene Farabella, Arun P Pandurangan, Nasrin Jahan, Mafalda Pires Damaso, Dino Osmanović, Cyril F Reboul and 6 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in eLife, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 89 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
89citing papers in PubMed, 1 pooled it
15.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

89 citing papers in PubMed, 1 synthesis or guideline pooled it, 164 citations in OpenAlex.

  1. Identification ofVirulence · 2021
    Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. TheeLife · 2022
    Article
  18. Article
  19. Article
  20. Article

29 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

16 authors at 5 institutions in 2 countries.

Carl LeungLondon Centre for Nanotechnology, University College London, London, United Kingdom.
Natalya V DudkinaDepartment of Crystallography, Birkbeck College, London, United Kingdom.
Natalya LukoyanovaDepartment of Crystallography, Birkbeck College, London, United Kingdom.
Adrian W HodelLondon Centre for Nanotechnology, University College London, London, United Kingdom.
Irene FarabellaDepartment of Crystallography, Birkbeck College, London, United Kingdom.
Arun P PanduranganDepartment of Crystallography, Birkbeck College, London, United Kingdom.
Nasrin JahanDepartment of Infection, Immunity, and Inflammation, University of Leicester, Leicester, United Kingdom.
Mafalda Pires DamasoDepartment of Infection, Immunity, and Inflammation, University of Leicester, Leicester, United Kingdom.
Dino OsmanovićLondon Centre for Nanotechnology, University College London, London, United Kingdom.
Cyril F ReboulDepartment of Biochemistry and Molecular Biology, Monash University, Melbourne, Australia.
Michelle A DunstoneDepartment of Biochemistry and Molecular Biology, Monash University, Melbourne, Australia.
Peter W AndrewDepartment of Infection, Immunity, and Inflammation, University of Leicester, Leicester, United Kingdom.
Rana LonnenDepartment of Infection, Immunity, and Inflammation, University of Leicester, Leicester, United Kingdom.
Maya TopfDepartment of Crystallography, Birkbeck College, London, United Kingdom.
Helen R SaibilDepartment of Crystallography, Birkbeck College, London, United Kingdom.
Bart W HoogenboomLondon Centre for Nanotechnology, University College London, London, United Kingdom.
Birkbeck, University of London · GBUniversity College London · GBUniversity of Leicester · GBMonash University · AUInstitute of Structural and Molecular Biology · GB

Funding

Biotechnology and Biological Sciences Research Council BB/G011729/1Biotechnology and Biological Sciences Research Council BB/J005932/1Biotechnology and Biological Sciences Research Council BB/J006254Biotechnology and Biological Sciences Research Council BB/K01692X/1European Research Council 294408
6 · The paper itself

Abstract

Membrane attack complex/perforin/cholesterol-dependent cytolysin (MACPF/CDC) proteins constitute a major superfamily of pore-forming proteins that act as bacterial virulence factors and effectors in immune defence. Upon binding to the membrane, they convert from the soluble monomeric form to oligomeric, membrane-inserted pores. Using real-time atomic force microscopy (AFM), electron microscopy (EM), and atomic structure fitting, we have mapped the structure and assembly pathways of a bacterial CDC in unprecedented detail and accuracy, focussing on suilysin from Streptococcus suis. We show that suilysin assembly is a noncooperative process that is terminated before the protein inserts into the membrane. The resulting ring-shaped pores and kinetically trapped arc-shaped assemblies are all seen to perforate the membrane, as also visible by the ejection of its lipids. Membrane insertion requires a concerted conformational change of the monomeric subunits, with a marked expansion in pore diameter due to large changes in subunit structure and packing.

Indexed as

Cell MembraneCholesterolComputer SystemsCryoelectron MicroscopyDiffusionDisulfidesHemolysin ProteinsKineticsMicroscopy, Atomic ForceModels, MolecularNegative StainingPerforinPore Forming Cytotoxic ProteinsProtein MultimerizationCholesterolDisulfidesHemolysin ProteinsPerforinPore Forming Cytotoxic Proteinssuilysinbacterial toxinsbiophysicscholesterol-dependent cytolysinsmembrane pore formationpore-forming proteinsS. suisstructural biology

Identifiers

PMID25457051
PMCPMC4381977
OpenAlexW2163246095

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.