Evidence map›Paper›PMID 25455901›Full record

ArticleJournal of virological methods2015

Rapid detection and differentiation of dengue virus serotypes by NS1 specific reverse transcription loop-mediated isothermal amplification (RT-LAMP) assay in patients presenting to a tertiary care hospital in Hyderabad, India.

M Neeraja, V Lakshmi, Vanjari Lavanya, E N Priyanka, M M Parida, P K Dash, Shashi Sharma, P V Lakshmana Rao, Gopal Reddy

Open access · greenAbstract readComparative StudyValidation Study
In one paragraph

Article in Journal of virological methods, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Challenges in Direct Detection of Flaviviruses: A Review.Pathogens (Basel, Switzerland) · 2023
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

M NeerajaDept. of Microbiology, Nizam's Institute of Medical Sciences, Punjagutta, Hyderabad 500082, Andhra Pradesh, India. Electronic address: mamidineeraja@yahoo.co.in.
V LakshmiDept. of Microbiology, Nizam's Institute of Medical Sciences, Punjagutta, Hyderabad 500082, Andhra Pradesh, India. Electronic address: lakshmi57vemu@gmail.com.
Vanjari LavanyaDept. of Microbiology, Nizam's Institute of Medical Sciences, Punjagutta, Hyderabad 500082, Andhra Pradesh, India. Electronic address: vanjari.lavanya@gmail.com.
E N PriyankaDept. of Microbiology, Nizam's Institute of Medical Sciences, Punjagutta, Hyderabad 500082, Andhra Pradesh, India. Electronic address: nagapriyanka.e@gmail.com.
M M ParidaDepartment of Virology, Defense R&D Establishment, DRDE, DRDO, Ministry of Defence, Jhansi Road, Gwalior 474002, Madhya Pradesh, India. Electronic address: paridamm@rediffmail.com.
P K DashDepartment of Virology, Defense R&D Establishment, DRDE, DRDO, Ministry of Defence, Jhansi Road, Gwalior 474002, Madhya Pradesh, India. Electronic address: pabandash@rediffmail.com.
Shashi SharmaDepartment of Virology, Defense R&D Establishment, DRDE, DRDO, Ministry of Defence, Jhansi Road, Gwalior 474002, Madhya Pradesh, India. Electronic address: shashibiotech@gmail.com.
P V Lakshmana RaoDRDO-BU Center for Life Sciences, Coimbatore, India. Electronic address: pvlrao@rediffmail.com.
Gopal ReddyDept. of Microbiology, Osmania University, Hyderabad 500007, Andhra Pradesh, India. Electronic address: gopalred@hotmail.com.
Nizam's Institute of Medical Sciences · INDefence Research and Development Establishment · INMinistry of Defence · INOsmania University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Early and rapid detection of dengue virus (DENV) infection during the acute phase of illness is crucial for proper patient management and prevention of the spread of the infection. In the present study, the standardization and validation of a one step, four tube reverse transcription loop-mediated isothermal amplification assay (RT-LAMP) for rapid detection and serotyping of the DENV targeting NS1 gene using the Genie® II flourometer was carried out. The performance of the RT-LAMP was compared to RT-PCR, CDC 1-4 Real time PCR and the NS1 antigen ELISA, IgM and IgG anti DENV antibodies. Acute DENV infection was confirmed in 250/300 patients suspected clinically of DENV infection. RT- LAMP and CDC 1-4 Real time PCR assay was positive in 148/250 patients, while 92/250 patients were positive for anti- Dengue IgM and IgG antibodies. The RT-LAMP assay and the CDC real-time RT-PCR assay showed high concordance (k=1.0). The detection rate of acute DENV infection improved to 96% (240/250) when the results of RT-LAMP were combined with NS1 Ag, IgM and IgG ELISA. The RT-LAMP had a detection limit of 100 copies for DEN-1 and DEN-2, 10 copies for DEN-3 and DEN-4 compared to 1000 copies for DEN-1 and DEN-2, 100 copies for DEN-3 and DEN-4 by the conventional RT-PCR. The assay showed 100% specificity. The RT-LAMP assay developed in this study has potential use for early clinical diagnosis, serotyping and surveillance of DENV infection in endemic countries such as India.

Indexed as

Reverse TranscriptionDengueDengue VirusHumansIndiaMolecular Sequence DataNucleic Acid Amplification TechniquesRNA, ViralSensitivity and SpecificitySequence Analysis, DNASerogroupTertiary Care CentersTime FactorsViral Nonstructural ProteinsRNA, ViralViral Nonstructural ProteinsDENV serotypesGenie(®) II flourometerNS 1 antigenRT-LAMPRT-PCRSerotyping

Identifiers

PMID25455901
PMCPMC7119600
OpenAlexW2060153768

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.