Evidence map›Paper›PMID 25452760›Full record

ReviewFrontiers in plant science2014

Ecological dynamics and complex interactions of Agrobacterium megaplasmids.

Thomas G Platt, Elise R Morton, Ian S Barton, James D Bever, Clay Fuqua

Open access · goldAbstract readReview
In one paragraph

Review in Frontiers in plant science, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 50 citations in OpenAlex.

  1. Draft genome sequence of the deep-subsurfaceMicrobiology resource announcements · 2024
    Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Diversification of plasmids in a genus of pathogenic and nitrogen-fixing bacteria.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Article
  7. Article
  8. Segregation of fourProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  9. Article
  10. Pathways of DNA Transfer to Plants fromAnnual review of phytopathology · 2019
    Article
  11. Review
  12. Draft Genome Sequence ofMicrobiology resource announcements · 2018
    Article
  13. Review
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Thomas G PlattDepartment of Biology, Indiana University Bloomington, IN, USA.
Elise R MortonDepartment of Biology, Indiana University Bloomington, IN, USA.
Ian S BartonDepartment of Biology, Indiana University Bloomington, IN, USA.
James D BeverDepartment of Biology, Indiana University Bloomington, IN, USA.
Clay FuquaDepartment of Biology, Indiana University Bloomington, IN, USA.
Indiana University Bloomington · US

Funding

Ecological dynamics of facultative bacterial pathogensR01GM092660 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI BEVER, JAMES DAVID · 2010 to 2013
$836k
NIGMS NIH HHS R01 GM092660
6 · The paper itself

Abstract

As with many pathogenic bacteria, agrobacterial plant pathogens carry most of their virulence functions on a horizontally transmissible genetic element. The tumor-inducing (Ti) plasmid encodes the majority of virulence functions for the crown gall agent Agrobacterium tumefaciens. This includes the vir genes which drive genetic transformation of host cells and the catabolic genes needed to utilize the opines produced by infected plants. The Ti plasmid also encodes, an opine-dependent quorum sensing system that tightly regulates Ti plasmid copy number and its conjugal transfer to other agrobacteria. Many natural agrobacteria are avirulent, lacking the Ti plasmid. The burden of harboring the Ti plasmid depends on the environmental context. Away from diseased hosts, plasmid costs are low but the benefit of the plasmid is also absent. Consequently, plasmidless genotypes are favored. On infected plants the costs of the Ti plasmid can be very high, but balanced by the opine benefits, locally favoring plasmid bearing cells. Cheating derivatives which do not incur virulence costs but can benefit from opines are favored on infected plants and in most other environments, and these are frequently isolated from nature. Many agrobacteria also harbor an At plasmid which can stably coexist with a Ti plasmid. At plasmid genes are less well characterized but in general facilitate metabolic activities in the rhizosphere and bulk soil, such as the ability to breakdown plant exudates. Examination of A. tumefaciens C58, revealed that harboring its At plasmid is much more costly than harboring it's Ti plasmid, but conversely the At plasmid is extremely difficult to cure. The interactions between these co-resident plasmids are complex, and depend on environmental context. However, the presence of a Ti plasmid appears to mitigate At plasmid costs, consistent with the high frequency with which they are found together.

Indexed as

bacterialecologygenomepathogenesisplasmidsrepliconvirulence

Identifiers

PMID25452760
PMCPMC4231840
OpenAlexW2109526111

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.