Evidence map›Paper›PMID 25452420›Full record

ArticleG3 (Bethesda, Md.)2014

Identical substitutions in magnesium chelatase paralogs result in chlorophyll-deficient soybean mutants.

Benjamin W Campbell, Dhananjay Mani, Shaun J Curtin, Rebecca A Slattery, Jean-Michel Michno, Donald R Ort, Philip J Schaus, Reid G Palmer, James H Orf, Robert M Stupar

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
6.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 69 citations in OpenAlex.

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  19. Single Nucleotide Mutagenesis of theFrontiers in plant science · 2020
    Article
  20. Fine mapping and molecular characterization of the virescent gene vsp in Upland cotton (Gossypium hirsutum).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Benjamin W CampbellDepartment of Agronomy and Plant Genetics, University of Minnesota, St. Paul, Minnesota 55108.
Dhananjay ManiDepartment of Agronomy and Plant Genetics, University of Minnesota, St. Paul, Minnesota 55108.
Shaun J CurtinDepartment of Agronomy and Plant Genetics, University of Minnesota, St. Paul, Minnesota 55108.
Rebecca A SlatteryDepartment of Plant Biology, University of Illinois, Urbana, Illinois 61801.
Jean-Michel MichnoDepartment of Agronomy and Plant Genetics, University of Minnesota, St. Paul, Minnesota 55108.
Donald R OrtDepartment of Plant Biology, University of Illinois, Urbana, Illinois 61801 US Department of Agriculture/Agricultural Research Service, Global Change and Photosynthesis Research Unit, Urbana, Illinois 61801.
Philip J SchausDepartment of Agronomy and Plant Genetics, University of Minnesota, St. Paul, Minnesota 55108.
Reid G PalmerDepartment of Agronomy, Iowa State University, Ames, Iowa 50011.
James H OrfDepartment of Agronomy and Plant Genetics, University of Minnesota, St. Paul, Minnesota 55108.
Robert M StuparDepartment of Agronomy and Plant Genetics, University of Minnesota, St. Paul, Minnesota 55108 rstupar@umn.edu.
University of Minnesota · USUniversity of Illinois Urbana-Champaign · USIowa State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The soybean [Glycine max (L.) Merr.] chlorophyll-deficient line MinnGold is a spontaneous mutant characterized by yellow foliage. Map-based cloning and transgenic complementation revealed that the mutant phenotype is caused by a nonsynonymous nucleotide substitution in the third exon of a Mg-chelatase subunit gene (ChlI1a) on chromosome 13. This gene was selected as a candidate for a different yellow foliage mutant, T219H (Y11y11), that had been previously mapped to chromosome 13. Although the phenotypes of MinnGold and T219H are clearly distinct, sequencing of ChlI1a in T219H identified a different nonsynonymous mutation in the third exon, only six base pairs from the MinnGold mutation. This information, along with previously published allelic tests, were used to identify and clone a third yellow foliage mutation, CD-5, which was previously mapped to chromosome 15. This mutation was identified in the ChlI1b gene, a paralog of ChlI1a. Sequencing of the ChlI1b allele in CD-5 identified a nonsynonymous substitution in the third exon that confers an identical amino acid change as the T219H substitution at ChlI1a. Protein sequence alignments of the two Mg-chelatase subunits indicated that the sites of amino acid modification in MinnGold, T219H, and CD-5 are highly conserved among photosynthetic species. These results suggest that amino acid alterations in this critical domain may create competitive inhibitory interactions between the mutant and wild-type ChlI1a and ChlI1b proteins.

Indexed as

Amino Acid SequenceChlorophyllGlycine maxLyasesMutationPlant LeavesProtein SubunitsChlorophyllLyasesmagnesium chelataseProtein Subunitschlorophyllduplicationparalogphotosynthesissoybean

Identifiers

PMID25452420
PMCPMC4291463
OpenAlexW2115724232

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.