Evidence map›Paper›PMID 25452419›Full record

ArticleG3 (Bethesda, Md.)2014

Parallel profiling of fission yeast deletion mutants for proliferation and for lifespan during long-term quiescence.

Theodora Sideri, Charalampos Rallis, Danny A Bitton, Bruno M Lages, Fang Suo, María Rodríguez-López, Li-Lin Du, Jürg Bähler

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
1.2field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 56 citations in OpenAlex.

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  15. Article
  16. Review
  17. Article
  18. Cellular quiescence in budding yeast.Yeast (Chichester, England) · 2021
    Review
  19. Article
  20. Selective Eradication ofAntibiotics (Basel, Switzerland) · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Theodora SideriUniversity College London, Research Department of Genetics, Evolution & Environment and Institute of Healthy Aging, Gower Street, Darwin Building, London WC1E 6BT, UK.
Charalampos RallisUniversity College London, Research Department of Genetics, Evolution & Environment and Institute of Healthy Aging, Gower Street, Darwin Building, London WC1E 6BT, UK.
Danny A BittonUniversity College London, Research Department of Genetics, Evolution & Environment and Institute of Healthy Aging, Gower Street, Darwin Building, London WC1E 6BT, UK.
Bruno M LagesUniversity College London, Research Department of Genetics, Evolution & Environment and Institute of Healthy Aging, Gower Street, Darwin Building, London WC1E 6BT, UK.
Fang SuoNational Institute of Biological Sciences, Beijing 102206, China.
María Rodríguez-LópezUniversity College London, Research Department of Genetics, Evolution & Environment and Institute of Healthy Aging, Gower Street, Darwin Building, London WC1E 6BT, UK.
Li-Lin DuNational Institute of Biological Sciences, Beijing 102206, China.
Jürg BählerUniversity College London, Research Department of Genetics, Evolution & Environment and Institute of Healthy Aging, Gower Street, Darwin Building, London WC1E 6BT, UK j.bahler@ucl.ac.uk.ORCID http://orcid.org/0000-0003-4036-1532
University College London · GBNational Institute of Biological Sciences, Beijing · CN

Funding

Biotechnology and Biological Sciences Research Council BB/I012451/1Wellcome Trust 095598Wellcome Trust 095598/Z/11/Z
6 · The paper itself

Abstract

Genetic factors underlying aging are remarkably conserved from yeast to human. The fission yeast Schizosaccharomyces pombe is an emerging genetic model to analyze cellular aging. Chronological lifespan (CLS) has been studied in stationary-phase yeast cells depleted for glucose, which only survive for a few days. Here, we analyzed CLS in quiescent S. pombe cells deprived of nitrogen, which arrest in a differentiated, G0-like state and survive for more than 2 months. We applied parallel mutant phenotyping by barcode sequencing (Bar-seq) to assay pooled haploid deletion mutants as they aged together during long-term quiescence. As expected, mutants with defects in autophagy or quiescence were under-represented or not detected. Lifespan scores could be calculated for 1199 mutants. We focus the discussion on the 48 most long-lived mutants, including both known aging genes in other model systems and genes not previously implicated in aging. Genes encoding membrane proteins were particularly prominent as pro-aging factors. We independently verified the extended CLS in individual assays for 30 selected mutants, showing the efficacy of the screen. We also applied Bar-seq to profile all pooled deletion mutants for proliferation under a standard growth condition. Unlike for stationary-phase cells, no inverse correlation between growth and CLS of quiescent cells was evident. These screens provide a rich resource for further studies, and they suggest that the quiescence model can provide unique, complementary insights into cellular aging.

Indexed as

MutationDNA Barcoding, TaxonomicDNA, FungalSchizosaccharomycesDNA, Fungalcellular agingcompetitive growthG0 phaselongevityquiescence

Identifiers

PMID25452419
PMCPMC4291465
OpenAlexW2149061955

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.