Evidence map›Paper›PMID 25452272›Full record

ArticleGenes & development2014

The evolution of thymic lymphomas in p53 knockout mice.

Crissy Dudgeon, Chang Chan, Wenfeng Kang, Yvonne Sun, Ryan Emerson, Harlan Robins, Arnold J Levine

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 73 citations in OpenAlex.

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  13. Targeting sphingosine kinase 1 in p53KO thymic lymphoma.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2023
    Article
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1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Crissy DudgeonRutgers Cancer Institute of New Jersey, New Brunswick, New Jersey 08901, USA;
Chang ChanRutgers Cancer Institute of New Jersey, New Brunswick, New Jersey 08901, USA; Department of Medicine, Rutgers Robert Wood Johnson Medical School, New Brunswick, New Jersey 08901, USA;
Wenfeng KangRutgers Cancer Institute of New Jersey, New Brunswick, New Jersey 08901, USA;
Yvonne SunRutgers Cancer Institute of New Jersey, New Brunswick, New Jersey 08901, USA;
Ryan EmersonBiomarker Discovery, Adaptive Biotechnologies, Seattle, Washington 98102, USA;
Harlan RobinsBiomarker Discovery, Adaptive Biotechnologies, Seattle, Washington 98102, USA; Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109, USA:
Arnold J LevineRutgers Cancer Institute of New Jersey, New Brunswick, New Jersey 08901, USA; Simons Center for Systems Biology, School of Natural Sciences, Institute for Advanced Study, Princeton, New Jersey 08540, USA alevine@ias.edu.
Rutgers, The State University of New Jersey · USAdaptive Biotechnologies (United States) · USCape Town HVTN Immunology Laboratory / Hutchinson Centre Research Institute of South Africa · ZA

Funding

TRANSCRIPTIONAL PROFILINGP30CA072720 · NCI · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI Chang S Chan · 1997 to 2026
$94.5M
Scientific ReagentsP01CA087497 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI PRIVES, CAROL · 2000 to 2021
$35.4M
NCI NIH HHS CA087497NCI NIH HHS P01 CA087497NCI NIH HHS P30 CA072720
6 · The paper itself

Abstract

Germline deletion of the p53 gene in mice gives rise to spontaneous thymic (T-cell) lymphomas. In this study, the p53 knockout mouse was employed as a model to study the mutational evolution of tumorigenesis. The clonality of the T-cell repertoire from p53 knockout and wild-type thymic cells was analyzed at various ages employing TCRβ sequencing. These data demonstrate that p53 knockout thymic lymphomas arose in an oligoclonal fashion, with tumors evolving dominant clones over time. Exon sequencing of tumor DNA revealed that all of the independently derived oligoclonal mouse tumors had a deletion in the Pten gene prior to the formation of the TCRβ rearrangement, produced early in development. This was followed in each independent clone of the thymic lymphoma by the amplification or overexpression of cyclin Ds and Cdk6. Alterations in the expression of Ikaros were common and blocked further development of CD-4/CD-8 T cells. While the frequency of point mutations in the genome of these lymphomas was one per megabase, there were a tremendous number of copy number variations producing the tumors' driver mutations. The initial inherited loss of p53 functions appeared to delineate an order of genetic alterations selected for during the evolution of these thymic lymphomas.

Indexed as

Evolution, MolecularAnimalsCyclin DCyclin-Dependent Kinase 6DNA Copy Number VariationsFemaleGene Expression Regulation, NeoplasticLymphomaMaleMice, KnockoutPoint MutationPTEN PhosphohydrolaseThymus NeoplasmsTumor Suppressor Protein p53Cdk6 protein, mouseCyclin DCyclin-Dependent Kinase 6PTEN PhosphohydrolasePten protein, mouseTumor Suppressor Protein p53chromosome abnormalitiesclonalitymutation ratep53PtenT-cell lymphoma

Identifiers

PMID25452272
PMCPMC4248292
OpenAlexW2087243198

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.