Evidence map›Paper›PMID 25451935›Full record

ArticleThe Journal of biological chemistry2015

Organelle-specific subunit interactions of the vertebrate two-pore channel family.

Oluseye A Ogunbayo, Yingmin Zhu, Bing Shen, Ejaife Agbani, Jie Li, Jianjie Ma, Michael X Zhu, A Mark Evans

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.7field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 25 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. NAADP-Mediated CaHandbook of experimental pharmacology · 2023
    Article
  5. Article
  6. Review
  7. Review
  8. Resting state structure of the hyperdepolarization activated two-pore channel 3.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  9. Review
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Oluseye A OgunbayoFrom the Centre for Integrative Physiology, College of Medicine and Veterinary Medicine, University of Edinburgh, Edinburgh EH8 9XD, Scotland, United Kingdom.
Yingmin Zhuthe Department of Integrative Biology and Pharmacology, The University of Texas Health Science Center at Houston, Houston, Texas 77030.
Bing Shenthe Department of Integrative Biology and Pharmacology, The University of Texas Health Science Center at Houston, Houston, Texas 77030, the Department of Physiology, Anhui Medical University, Hefei, Anhui 230032, China, and.
Ejaife AgbaniFrom the Centre for Integrative Physiology, College of Medicine and Veterinary Medicine, University of Edinburgh, Edinburgh EH8 9XD, Scotland, United Kingdom.
Jie Lithe Department of Physiology, Anhui Medical University, Hefei, Anhui 230032, China, and.
Jianjie Mathe Department of Surgery, Davis Heart and Lung Research Institute, The Ohio State University Wexner Medical Center, Columbus, Ohio 43210.
Michael X Zhuthe Department of Integrative Biology and Pharmacology, The University of Texas Health Science Center at Houston, Houston, Texas 77030, michael.x.zhu@uth.tmc.edu.
A Mark EvansFrom the Centre for Integrative Physiology, College of Medicine and Veterinary Medicine, University of Edinburgh, Edinburgh EH8 9XD, Scotland, United Kingdom, mark.evans@ed.ac.uk.
The University of Texas Health Science Center at Houston · USUniversity of Edinburgh · GBAnhui Medical University · CN

Funding

The role of two-pore channels in integrative calcium signalingR01GM092759 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI ZHU, MICHAEL X · 2010 to 2013
$1.2M
British Heart Foundation PG/10/95/28657British Heart Foundation RG/12/14/29885NIGMS NIH HHS R01 GM092759
6 · The paper itself

Abstract

The organellar targeting of two-pore channels (TPCs) and their capacity to associate as homo- and heterodimers may be critical to endolysosomal signaling. A more detailed understanding of the functional association of vertebrate TPC1-3 is therefore necessary. We report here that when stably expressed in HEK293 cells, human (h) TPC1 and chicken (c) TPC3 were specifically targeted to different subpopulations of endosomes, hTPC2 was specifically targeted to lysosomes, and rabbit (r) TPC3 was specifically targeted to both endosomes and lysosomes. Intracellular dialysis of NAADP evoked a Ca(2+) transient in HEK293 cells that stably overexpressed hTPC1, hTPC2, and rTPC3, but not in cells that stably expressed cTPC3. The Ca(2+) transients induced in cells that overexpressed endosome-targeted hTPC1 were abolished upon depletion of acidic Ca(2+) stores by bafilomycin A1, but remained unaffected following depletion of endoplasmic reticulum stores by thapsigargin. In contrast, Ca(2+) transients induced via lysosome-targeted hTPC2 and endolysosome-targeted rTPC3 were abolished by bafilomycin A1 and markedly attenuated by thapsigargin. NAADP induced marked Ca(2+) transients in HEK293 cells that stably coexpressed hTPC2 with hTPC1 or cTPC3, but failed to evoke any such response in cells that coexpressed interacting hTPC2 and rTPC3 subunits. We therefore conclude that 1) all three TPC subtypes may support Ca(2+) signaling from their designate acidic stores, and 2) lysosome-targeted (but not endosome-targeted) TPCs support coupling to the endoplasmic reticulum.

Indexed as

AnimalsCalciumCalcium ChannelsCalcium SignalingChickensEndoplasmic ReticulumEndosomesGene Expression RegulationHEK293 CellsHumansLysosomesMacrolidesNADPRabbitsThapsigarginTwo-Pore Channelsbafilomycin A1CalciumCalcium ChannelsMacrolidesNAADPNADPThapsigarginTPCN1 protein, humanTPCN2 protein, humanTwo-Pore ChannelsCalciumCoexpressionCo-immunoprecipitationEndoplasmic Reticulum (ER)FluorescenceFluorescence Resonance Energy Transfer (FRET)ImagingLysosomeNAADPTwo-pore Channel Family

Identifiers

PMID25451935
PMCPMC4294476
OpenAlexW2055871844

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.