Evidence map›Paper›PMID 25451928›Full record

ArticleThe Journal of biological chemistry2015

Significantly enhanced heme retention ability of myoglobin engineered to mimic the third covalent linkage by nonaxial histidine to heme (vinyl) in synechocystis hemoglobin.

Sheetal Uppal, Shikha Salhotra, Nitika Mukhi, Fatima Kamal Zaidi, Manas Seal, Somdatta Ghosh Dey, Rajiv Bhat, Suman Kundu

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 18 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Sheetal UppalFrom the Department of Biochemistry, University of Delhi South Campus, New Delhi 110021, India.
Shikha SalhotraFrom the Department of Biochemistry, University of Delhi South Campus, New Delhi 110021, India.
Nitika MukhiFrom the Department of Biochemistry, University of Delhi South Campus, New Delhi 110021, India.
Fatima Kamal Zaidithe School of Biotechnology, Jawaharlal Nehru University, New Delhi 110067, India, and.
Manas Sealthe Department of Inorganic Chemistry, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700032, India.
Somdatta Ghosh Deythe Department of Inorganic Chemistry, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700032, India.
Rajiv Bhatthe School of Biotechnology, Jawaharlal Nehru University, New Delhi 110067, India, and.
Suman KunduFrom the Department of Biochemistry, University of Delhi South Campus, New Delhi 110021, India, suman.kundu@south.du.ac.in.
University of Delhi · INIndian Association for the Cultivation of Science · INJawaharlal Nehru University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Heme proteins, which reversibly bind oxygen and display a particular fold originally identified in myoglobin (Mb), characterize the "hemoglobin (Hb) superfamily." The long known and widely investigated Hb superfamily, however, has been enriched by the discovery and investigation of new classes and members. Truncated Hbs typify such novel classes and exhibit a distinct two-on-two α-helical fold. The truncated Hb from the freshwater cyanobacterium Synechocystis exhibits hexacoordinate heme chemistry and bears an unusual covalent bond between the nonaxial His(117) and a heme porphyrin 2-vinyl atom, which remains tightly associated with the globin unlike any other. It seems to be the most stable Hb known to date, and His(117) is the dominant force holding the heme. Mutations of amino acid residues in the vicinity did not influence this covalent linkage. Introduction of a nonaxial His into sperm whale Mb at the topologically equivalent position and in close proximity to vinyl group significantly increased the heme stability of this prototype globin. Reversed phase chromatography, electrospray ionization-MS, and MALDI-TOF analyses confirmed the presence of covalent linkage in Mb I107H. The Mb mutant with the engineered covalent linkage was stable to denaturants and exhibited ligand binding and auto-oxidation rates similar to the wild type protein. This indeed is a novel finding and provides a new perspective to the evolution of Hbs. The successful attempt at engineering heme stability holds promise for the production of stable Hb-based blood substitute.

Indexed as

Amino Acid SequenceCalorimetry, Differential ScanningCircular DichroismElectron Spin Resonance SpectroscopyEscherichia coliHemeHemoglobinsHistidineHydrogen-Ion ConcentrationMolecular Sequence DataMutagenesis, Site-DirectedMutationMyoglobinProtein EngineeringRecombinant ProteinsSequence Homology, Amino AcidHemeHemoglobinsHistidineMyoglobinRecombinant ProteinsTruncated HemoglobinsEngineered Heme AffinityEngineering Heme Stability in MyoglobinHemeMimic of Third Covalent Linkage to HemeMutagenesisMyoglobinMyoglobin with Low Heme DissociationProtein EngineeringProtein StabilitySynechocystis Hemoglobin

Identifiers

PMID25451928
PMCPMC4303654
OpenAlexW2087316109

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.