Evidence map›Paper›PMID 25451528›Full record

ArticleJournal of theoretical biology2015

Computational modelling of amino acid exchange and facilitated transport in placental membrane vesicles.

N Panitchob, K L Widdows, I P Crocker, M A Hanson, E D Johnstone, C P Please, C P Sibley, J D Glazier, R M Lewis, B G Sengers

Open access · hybridAbstract read
In one paragraph

Article in Journal of theoretical biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.7field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Blood flow and transport in the human placenta.Annual review of fluid mechanics · 2019
    Article
  3. Review
  4. Article
  5. Transfer and Metabolism of Cortisol by the Isolated Perfused Human Placenta.The Journal of clinical endocrinology and metabolism · 2018
    Article
  6. Article
  7. Article
  8. Article
  9. Phenylalanine transfer across the isolated perfused human placenta: an experimental and modeling investigation.American journal of physiology. Regulatory, integrative and comparative physiology · 2016
    Article
  10. Article
  11. Article
  12. Integration of computational modeling with membrane transport studies reveals new insights into amino acid exchange transport mechanisms.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

N PanitchobBioengineering Science Research Group, Faculty of Engineering and the Environment, University of Southampton, Southampton, UK.
K L WiddowsMaternal & Fetal Health Research Centre, Institute of Human Development, University of Manchester, Manchester, UK; St. Mary's Hospital & Central Manchester University Hospitals NHS Foundation Trust, Manchester Academic Health Science Centre, Manchester, UK.
I P CrockerMaternal & Fetal Health Research Centre, Institute of Human Development, University of Manchester, Manchester, UK; St. Mary's Hospital & Central Manchester University Hospitals NHS Foundation Trust, Manchester Academic Health Science Centre, Manchester, UK.
M A HansonFaculty of Medicine, University of Southampton, Southampton, UK.
E D JohnstoneMaternal & Fetal Health Research Centre, Institute of Human Development, University of Manchester, Manchester, UK; St. Mary's Hospital & Central Manchester University Hospitals NHS Foundation Trust, Manchester Academic Health Science Centre, Manchester, UK.
C P PleaseMathematical Institute, Oxford University, Oxford, UK.
C P SibleyMaternal & Fetal Health Research Centre, Institute of Human Development, University of Manchester, Manchester, UK; St. Mary's Hospital & Central Manchester University Hospitals NHS Foundation Trust, Manchester Academic Health Science Centre, Manchester, UK.
J D GlazierMaternal & Fetal Health Research Centre, Institute of Human Development, University of Manchester, Manchester, UK; St. Mary's Hospital & Central Manchester University Hospitals NHS Foundation Trust, Manchester Academic Health Science Centre, Manchester, UK.
R M LewisFaculty of Medicine, University of Southampton, Southampton, UK; Institute for Life Sciences, University of Southampton, Southampton, UK.
B G SengersBioengineering Science Research Group, Faculty of Engineering and the Environment, University of Southampton, Southampton, UK; Institute for Life Sciences, University of Southampton, Southampton, UK. Electronic address: B.G.Sengers@soton.ac.uk.
University of Southampton · GBManchester Academic Health Science Centre · GBSt Mary's Hospital · GBSt. Mary's Hospital · GBUniversity of Oxford · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Placental amino acid transport is required for fetal development and impaired transport has been associated with poor fetal growth. It is well known that placental amino acid transport is mediated by a broad array of specific membrane transporters with overlapping substrate specificity. However, it is not fully understood how these transporters function, both individually and as an integrated system. We propose that mathematical modelling could help in further elucidating the underlying mechanisms of how these transporters mediate placental amino acid transport. The aim of this work is to model the sodium independent transport of serine, which has been assumed to follow an obligatory exchange mechanism. However, previous amino acid uptake experiments in human placental microvillous plasma membrane vesicles have persistently produced results that are seemingly incompatible with such a mechanism; i.e. transport has been observed under zero-trans conditions, in the absence of internal substrates inside the vesicles to drive exchange. This observation raises two alternative hypotheses; (i) either exchange is not fully obligatory, or (ii) exchange is indeed obligatory, but an unforeseen initial concentration of amino acid substrate is present within the vesicle which could drive exchange. To investigate these possibilities, a mathematical model for tracer uptake was developed based on carrier mediated transport, which can represent either facilitated diffusion or obligatory exchange (also referred to as uniport and antiport mechanisms, respectively). In vitro measurements of serine uptake by placental microvillous membrane vesicles were carried out and the model applied to interpret the results based on the measured apparent Michaelis-Menten parameters Km and Vmax. In addition, based on model predictions, a new time series experiment was implemented to distinguish the hypothesised transporter mechanisms. Analysis of the results indicated the presence of a facilitated transport component, while based on the model no evidence for substantial levels of endogenous amino acids within the vesicle was found.

Indexed as

Facilitated DiffusionMaternal-Fetal ExchangeModels, BiologicalAmino AcidsFemaleHumansKineticsMembranesPlacentaPregnancySerineTime FactorsTransport VesiclesAmino AcidsSerineAmino acidsAntiportCarrier modelMembrane transport

Identifiers

PMID25451528
PMCPMC4271776
OpenAlexW2081378145

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.