Evidence map›Paper›PMID 25450012›Full record

ArticleBiotechnology and bioengineering2015

Improving olefin tolerance and production in E. coli using native and evolved AcrB.

Florence Mingardon, Camille Clement, Kathleen Hirano, Melissa Nhan, Eric G Luning, Angelique Chanal, Aindrila Mukhopadhyay

Open access · hybridAbstract read
In one paragraph

Article in Biotechnology and bioengineering, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 55 citations in OpenAlex.

  1. Review
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  8. Biodegradation of aromatic pollutants meets synthetic biology.Synthetic and systems biotechnology · 2021
    Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Enhancing Production of Pinene inFrontiers in microbiology · 2018
    Article
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  15. Review
  16. Review
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Florence MingardonTotal New Energies Inc., Emeryville, California, 94608.
Camille Clement
Kathleen Hirano
Melissa Nhan
Eric G Luning
Angelique Chanal
Aindrila Mukhopadhyay
Lawrence Berkeley National Laboratory · USTotal (United States) · USJoint BioEnergy Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Microorganisms can be engineered for the production of chemicals utilized in the polymer industry. However many such target compounds inhibit microbial growth and might correspondingly limit production levels. Here, we focus on compounds that are precursors to bioplastics, specifically styrene and representative alpha-olefins; 1-hexene, 1-octene, and 1-nonene. We evaluated the role of the Escherichia coli efflux pump, AcrAB-TolC, in enhancing tolerance towards these olefin compounds. AcrAB-TolC is involved in the tolerance towards all four compounds in E. coli. Both styrene and 1-hexene are highly toxic to E. coli. Styrene is a model plastics precursor with an established route for production in E. coli (McKenna and Nielsen, 2011). Though our data indicates that AcrAB-TolC is important for its optimal production, we observed a strong negative selection against the production of styrene in E. coli. Thus we used 1-hexene as a model compound to implement a directed evolution strategy to further improve the tolerance phenotype towards this alpha-olefin. We focused on optimization of AcrB, the inner membrane domain known to be responsible for substrate binding, and found several mutations (A279T, Q584R, F617L, L822P, F927S, and F1033Y) that resulted in improved tolerance. Several of these mutations could also be combined in a synergistic manner. Our study shows efflux pumps to be an important mechanism in host engineering for olefins, and one that can be further improved using strategies such as directed evolution, to increase tolerance and potentially production.

Indexed as

AlkenesATP-Binding Cassette, Sub-Family C ProteinsEscherichia coliEscherichia coli ProteinsIndustrial MicrobiologyModels, MolecularPoint MutationProtein EngineeringProtein Structure, Tertiary1-hexene1-octeneAcrB protein, E coliAlkenesATP-Binding Cassette, Sub-Family C ProteinsEscherichia coli Proteinsdirected evolutionhost engineeringolefin productionsolvent tolerance

Identifiers

PMID25450012
PMCPMC4406151
OpenAlexW1950236790

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.