Evidence map›Paper›PMID 25450003›Full record

ArticleJournal of immunological methods2014

CyTOF supports efficient detection of immune cell subsets from small samples.

Yi Yao, Rebecca Liu, Min Sun Shin, Mark Trentalange, Heather Allore, Ala Nassar, Insoo Kang, Jordan S Pober, Ruth R Montgomery

Abstract read
In one paragraph

Article in Journal of immunological methods, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed.

  1. Trial
  2. Trial
  3. Trial
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Review
  13. Analyzing signaling activity and function in hematopoietic cells.The Journal of experimental medicine · 2021
    Review
  14. Review
  15. Article
  16. Article
  17. Novel Technologies in Studying Brain Immune Response.Oxidative medicine and cellular longevity · 2021
    Review
  18. Regulatory and IgEMethods in molecular biology (Clifton, N.J.) · 2021
    Article
  19. Article
  20. Article

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Yi YaoDepartment of Internal Medicine, Yale University School of Medicine, New Haven, CT, United States.
Rebecca LiuDepartment of Immunobiology, Yale University School of Medicine, New Haven, CT, United States.
Min Sun ShinDepartment of Internal Medicine, Yale University School of Medicine, New Haven, CT, United States.
Mark TrentalangeDepartment of Internal Medicine, Yale University School of Medicine, New Haven, CT, United States.
Heather AlloreDepartment of Internal Medicine, Yale University School of Medicine, New Haven, CT, United States.
Ala NassarDepartment of Internal Medicine, Yale University School of Medicine, New Haven, CT, United States.
Insoo KangDepartment of Internal Medicine, Yale University School of Medicine, New Haven, CT, United States.
Jordan S PoberDepartment of Internal Medicine, Yale University School of Medicine, New Haven, CT, United States; Department of Immunobiology, Yale University School of Medicine, New Haven, CT, United States; Human and Translational Immunology Program, Yale University School of Medicine, New Haven, CT, United States.
Ruth R MontgomeryDepartment of Internal Medicine, Yale University School of Medicine, New Haven, CT, United States; Human and Translational Immunology Program, Yale University School of Medicine, New Haven, CT, United States. Electronic address: ruth.montgomery@yale.edu.

Funding

Systems investigation of vaccine responses in B cell depleted autoimmune patientsU19AI089992 · NIAID · YALE UNIVERSITY · PI David A. Hafler, RUTH R MONTGOMERY · 2010 to 2026
$50.4M
Yale Study Support Suite (YES3): Dashboard and Web Portal Software Supporting Research Workflow through integrated, customizable REDCap External ModulesP30AG021342 · NIA · YALE UNIVERSITY · PI Denise Esserman · 2002 to 2026
$37.9M
Yale University Clinical and Translational Science Award ProgramUL1TR000142 · NCATS · YALE UNIVERSITY · PI SHERWIN, ROBERT S · 2012 to 2015
$31.8M
Presentation of Alloantigen by Human Vascular CellsR01HL051014 · NHLBI · YALE UNIVERSITY · PI MANES, THOMAS DAVID, POBER, JORDAN S · 1994 to 2019
$10.4M
NCATS NIH HHS UL1 TR000142NHLBI NIH HHS R01 HL051014NHLBI NIH HHS R01-HL051014NIAID NIH HHS HHSN272201100019CNIAID NIH HHS U19 AI089992NIAID NIH HHS U19AI089992NIA NIH HHS P30 AG021342NIA NIH HHS P30AG21342PHS HHS HHS N272201100019C
6 · The paper itself

Abstract

Analysis of immune cell states is paramount to our understanding of the pathogenesis of a broad range of human diseases. Immunologists rely on fluorescence cytometry for cellular analysis, and while detection of 8 markers is now well established, the overlap of fluorescent signals limits efficiency. Mass cytometry or CyTOF (Cytometry by Time-Of-Flight) is a new technology for multiparameter single cell analysis that overcomes many limitations of fluorescence-based flow cytometry and can routinely detect as many as 40 markers per sample. This technology provides tremendous detail for cellular analysis of multiple cell populations simultaneously and is a powerful technique for translational investigations. Here we present reproducible detection of immune cell subsets starting with as few as 10,000 cells. Our study provides methods to employ CyTOF for small samples, which is especially relevant for investigation of limited patient biopsies in translational and clinical research.

Indexed as

Antigens, CDBiomarkersB-LymphocytesCell LineageDendritic CellsFlow CytometryHumansImmunophenotypingKiller Cells, NaturalMonocytesSingle-Cell AnalysisSkinStaining and LabelingT-LymphocytesAntigens, CDBiomarkersCyTOFLeukocytesMass cytometryMultidimensional single cell analysisTranslational immunologyTranslational research

Identifiers

PMID25450003
PMCPMC4269324

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.