Evidence map›Paper›PMID 25448691›Full record

ArticleDevelopmental biology2015

Mechanics of blastopore closure during amphibian gastrulation.

Rafey Feroze, Joseph H Shawky, Michelangelo von Dassow, Lance A Davidson

Open access · greenAbstract read
In one paragraph

Article in Developmental biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
0.9field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Shape, Strain, and Stability: Epithelia Under High Strain.bioRxiv : the preprint server for biology · 2025
    Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Sensing the force in living embryos.Nature materials · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Harnessing mechanobiology for kidney organoid research.Frontiers in cell and developmental biology · 2023
    Review
  14. Chambers for Culturing and ImmobilizingCold Spring Harbor protocols · 2022
    Article
  15. Hindbrain neuropore tissue geometry determines asymmetric cell-mediated closure dynamics in mouse embryos.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  16. Article
  17. Convergent extension in the amphibian, Xenopus laevis.Current topics in developmental biology · 2020
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Rafey FerozeDepartment of Bioengineering, University of Pittsburgh, Pittsburgh, PA, USA; School of Medicine, University of Pittsburgh Medical Center, University of Pittsburgh, Pittsburgh, PA, USA.
Joseph H ShawkyDepartment of Bioengineering, University of Pittsburgh, Pittsburgh, PA, USA.
Michelangelo von DassowDepartment of Bioengineering, University of Pittsburgh, Pittsburgh, PA, USA; Duke University Marine Lab, Beaufort, NC 28516, USA.
Lance A DavidsonDepartment of Bioengineering, University of Pittsburgh, Pittsburgh, PA, USA; Department of Computational and Systems Biology, University of Pittsburgh, Pittsburgh, PA, USA; Department of Developmental Biology, University of Pittsburgh, Pittsburgh, PA, USA. Electronic address: lad43@pitt.edu.
University of Pittsburgh · US

Funding

Training in Biomechanics in Regenerative MedicineT32EB003392 · NIBIB · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI WOO, SAVIO L-Y. · 2005 to 2020
$4.0M
The Biomechanics of morphogenesis in the frogR01HD044750 · NICHD · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI DAVIDSON, LANCE A. · 2005 to 2020
$3.8M
Biophysics of development buffering: Temperature as a tool to study how the cytosR21ES019259 · NIEHS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI DAVIDSON, LANCE A. · 2010 to 2011
$404k
NIBIB NIH HHS T32 EB003392NIBIB NIH HHS T32EB003392NICHD NIH HHS R01 HD044750NICHD NIH HHS R01HD044750NIEHS NIH HHS R21 ES019259NIEHS NIH HHS R21ES019259
6 · The paper itself

Abstract

Blastopore closure in the amphibian embryo involves large scale tissue reorganization driven by physical forces. These forces are tuned to generate sustained blastopore closure throughout the course of gastrulation. We describe the mechanics of blastopore closure at multiple scales and in different regions around the blastopore by characterizing large scale tissue deformations, cell level shape change and subcellular F-actin organization and by measuring tissue force production and structural stiffness of the blastopore during gastrulation. We find that the embryo generates a ramping magnitude of force until it reaches a peak force on the order of 0.5μN. During this time course, the embryo also stiffens 1.5 fold. Strain rate mapping of the dorsal, ventral and lateral epithelial cells proximal to the blastopore reveals changing patterns of strain rate throughout closure. Cells dorsal to the blastopore, which are fated to become neural plate ectoderm, are polarized and have straight boundaries. In contrast, cells lateral and ventral to the blastopore are less polarized and have tortuous cell boundaries. The F-actin network is organized differently in each region with the highest percentage of alignment occurring in the lateral region. Interestingly F-actin was consistently oriented toward the blastopore lip in dorsal and lateral cells, but oriented parallel to the lip in ventral regions. Cell shape and F-actin alignment analyses reveal different local mechanical environments in regions around the blastopore, which was reflected by the strain rate maps.

Indexed as

GastrulationGene Expression Regulation, DevelopmentalActinsActomyosinAnimalsAnisotropyBody PatterningCell ShapeCytoskeletonGastrulaMicroscopy, ConfocalMicrotubulesModels, TheoreticalPolymersStress, MechanicalTime FactorsActinsActomyosinPolymersBlastopore closureCell polarityCytoskeletal inhibitorsDevelopmentGastrulationGastrulation mechanicsMorphogenesisNanoscale force measurementTissue force productionTissue strain

Identifiers

PMID25448691
PMCPMC4317491
OpenAlexW2024612974

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.