Evidence map›Paper›PMID 25445671›Full record

ArticleBiochimica et biophysica acta2015

The YhhN protein of Legionella pneumophila is a Lysoplasmalogenase.

Marianne S Jurkowitz, Aalapi Patel, Lai-Chu Wu, Annalise Krautwater, Douglas R Pfeiffer, Charles E Bell

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Biochimica et biophysica acta, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Vesicles FromFrontiers in microbiology · 2019
    Article
  8. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Marianne S JurkowitzDepartment of Molecular and Cellular Biochemistry, The Ohio State University, Columbus, OH 43210, USA. Electronic address: jurkowitz.1@osu.edu.
Aalapi PatelDepartment of Molecular and Cellular Biochemistry, The Ohio State University, Columbus, OH 43210, USA.
Lai-Chu WuDepartment of Molecular and Cellular Biochemistry, The Ohio State University, Columbus, OH 43210, USA; The Comprehensive Cancer Center, The Ohio State University, Columbus, OH 43210, USA.
Annalise KrautwaterDepartment of Molecular and Cellular Biochemistry, The Ohio State University, Columbus, OH 43210, USA.
Douglas R PfeifferDepartment of Molecular and Cellular Biochemistry, The Ohio State University, Columbus, OH 43210, USA.
Charles E BellDepartment of Molecular and Cellular Biochemistry, The Ohio State University, Columbus, OH 43210, USA; Department of Chemistry and Biochemistry, The Ohio State University, Columbus, OH 43210, USA.
The Ohio State University · US

Funding

Translational Therapeutics Research Program (TT)P30CA016058 · NCI · OHIO STATE UNIVERSITY · PI Tasleem J Padamsee · 1985 to 2026
$132.3M
YEAST ER MOLECULAR CHAPERONE TRANSLOCATION: GENOME DATABANK HOMOLOGSP41RR006009 · NCRR · MELLON PITTS CORPORATION (MPC CORP) · PI KNOLL, ERIC · 1990 to 2011
$22.0M
NCI NIH HHS P30 CA016058NCI NIH HHS P30 CA16058NCRR NIH HHS P41 RR006009
6 · The paper itself

Abstract

Lysoplasmalogenase catalyzes hydrolytic cleavage of the vinyl-ether bond of lysoplasmalogen to yield fatty aldehyde and glycerophospho-ethanolamine or glycerophospho-choline. We recently purified lysoplasmalogenase from rat liver microsomes and identified the protein as TMEM86B, an integral membrane protein that is a member of the YhhN family found in numerous species of eukaryotes and bacteria. To test the hypothesis that bacterial YhhN proteins also function as lysoplasmalogenase enzymes, we cloned the Lpg1991 gene of Legionella pneumophila, which encodes a 216 amino acid YhhN protein (LpYhhN), and expressed it in Escherichia coli as a C-terminal-GFP-His8-fusion. Membranes were solubilized and the fusion protein was purified by nickel-affinity chromatography, cleaved with Tobacco Etch Virus protease, and subjected to a reverse nickel column to purify the un-tagged LpYhhN. Both the fusion protein and un-tagged LpYhhN exhibit robust lysoplasmalogenase activity, cleaving the vinyl-ether bond of lysoplasmalogen with a Vmax of 12 µmol/min/mg protein and a Km of 45 μM. LpYhhN has no activity on diradyl plasmalogen, 1-alkenyl-glycerol, and monoacylglycerophospho-ethanolamine or monoacylglycerophospho-choline; the pH optimum is 6.5-7.0. These properties are very similar to mammalian TMEM86B. Sequence analysis suggests that YhhN proteins contain eight transmembrane helices, an N-in/C-in topology, and about 5 highly conserved amino acid residues that may form an active site. This work is the first to demonstrate a function for a bacterial YhhN protein, as a vinyl ether bond hydrolase specific for lysoplasmalogen. Since L. pneumophila does not contain endogenous plasmalogens, we hypothesize that LpYhhN may serve to protect the bacterium from lysis by lysoplasmalogen derived from plasmalogens of the host.

Indexed as

Amino Acid SequenceAnimalsBacterial ProteinsCatalytic DomainChromatography, AffinityCloning, MolecularConserved SequenceEndopeptidasesEscherichia coliGene ExpressionGreen Fluorescent ProteinsHydrogen-Ion ConcentrationHydrolasesHydrolysisKineticsLegionella pneumophilaBacterial ProteinsEndopeptidasesGreen Fluorescent ProteinsHydrolasesLysophospholipidslysoplasmalogenaselysoplasmalogensRecombinant Fusion ProteinsTEV proteaseLegionella pneumophilaLysophospholipaseLysoplasmalogenasePlasmalogen/lysoplasmalogenVinyl ether bondYhhN gene Lpg1991

Identifiers

PMID25445671
PMCPMC4282143
OpenAlexW1995703145

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.