Evidence map›Paper›PMID 25445177›Full record

ArticleCurrent protocols in chemical biology2014

Probing small-molecule microarrays with tagged proteins in cell lysates.

Marius S Pop, Dina Wassaf, Angela N Koehler

Abstract read
In one paragraph

Article in Current protocols in chemical biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Marius S PopBroad Institute of Harvard and MIT, Cambridge, Massachusetts.
Dina WassafBroad Institute of Harvard and MIT, Cambridge, Massachusetts.
Angela N KoehlerBroad Institute of Harvard and MIT, Cambridge, Massachusetts.

Funding

Developing Direct Small-Molecule Probes of Myc-Dependent TranscriptionR01CA160860 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI KOEHLER, ANGELA NICOLE · 2012 to 2015
$1.4M
NCI NIH HHS CA160860NCI NIH HHS R01 CA160860
6 · The paper itself

Abstract

The technique of small-molecule microarray (SMM) screening is based on the ability of small molecules to bind to various soluble proteins. This type of interaction is easily detected by the presence of a fluorescence signal produced by labeled antibodies that specifically recognize a unique sequence (tag) present on the target protein. The fluorescent signal intensity values are determined based on signal-to-noise ratios (SNRs). SMM screening is a high-throughput, unbiased method that can rapidly identify novel direct ligands for various protein targets. This binding-based assay format is generally applicable to most proteins, but it is especially useful for protein targets that do not possess an enzymatic activity. SMMs enable screening a protein in a purified form or in the context of a cellular lysate, likely providing a more physiologically relevant screening environment.

Indexed as

Cell ExtractsFluorescent Antibody TechniqueHumansLigandsProtein Array AnalysisProtein BindingProteinsSmall Molecule LibrariesCell ExtractsLigandsProteinsSmall Molecule Librariesbinding assaycellular lysatefluorescenceprotein complexsmall-molecule microarray

Identifiers

PMID25445177
PMCPMC4266996

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.