Evidence map›Paper›PMID 25443494›Full record

ReviewTrends in immunology2014

Epigenomic regulation of host-microbiota interactions.

Theresa Alenghat, David Artis

Abstract readReview
In one paragraph

Review in Trends in immunology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed.

  1. Nutrients · 2024
    Trial
  2. Review
  3. Review
  4. Article
  5. Review
  6. Article
  7. Review
  8. Review
  9. Article
  10. The Microbiota-Gut-Brain Axis and Epilepsy.Cellular and molecular neurobiology · 2022
    Review
  11. Article
  12. Review
  13. Review
  14. The link among microbiota, epigenetics, and disease development.Environmental science and pollution research international · 2021
    Review
  15. The role of the gut microbiome in cancer-related fatigue: pilot study on epigenetic mechanisms.Supportive care in cancer : official journal of the Multinational Association of Supportive Care in Cancer · 2021
    Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Theresa AlenghatDivision of Immunobiology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH 45229, USA. Electronic address: theresa.alenghat@cchmc.org.
David ArtisWeill Cornell Medical College, Cornell University, New York, NY 10022, USA. Electronic address: dartis@med.cornell.edu.

Funding

Transcriptomics and Repertoire ProfilingP01AI106697 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Donna L. Farber · 2013 to 2026
$31.3M
Regulation of protective immunity following enteric viral infectionU01AI095608 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI ARTIS, DAVID, SONNENBERG, GREGORY F · 2011 to 2025
$11.0M
Innate immunity and inflammation following helminth infectionR01AI074878 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI ARTIS, DAVID · 2008 to 2019
$4.2M
Immuno-regulation of GI nematode infectionR01AI061570 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI ARTIS, DAVID · 2004 to 2013
$4.1M
Regulation and function of innate lymphoid cells in the gutR01AI095466 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI ARTIS, DAVID · 2011 to 2022
$3.7M
Regulation and function of innate lymphoid cells during influenza virus infectionR01AI102942 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI ARTIS, DAVID · 2013 to 2017
$2.1M
Cytokine regulation of anti-helminth immunityR01AI097333 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI ARTIS, DAVID · 2012 to 2016
$2.0M
Epigenetic regulation of intestinal homeostasisK08DK093784 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI ALENGHAT, THERESA · 2012 to 2016
$764k
Functional Biology of Intestinal Epithelial Cells in Food AllergyR21AI087990 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI ARTIS, DAVID, ZIEGLER, STEVEN F · 2010 to 2011
$484k
NIAID NIH HHS AI061570NIAID NIH HHS AI074878NIAID NIH HHS AI087990NIAID NIH HHS AI095466NIAID NIH HHS AI095608NIAID NIH HHS AI097333NIAID NIH HHS AI102942NIAID NIH HHS AI106697NIAID NIH HHS P01 AI106697NIAID NIH HHS R01 AI061570NIAID NIH HHS R01 AI074878NIAID NIH HHS R01 AI095466NIAID NIH HHS R01 AI097333NIAID NIH HHS R01 AI102942NIAID NIH HHS R21 AI087990NIAID NIH HHS U01 AI095608NIDDK NIH HHS DK093784NIDDK NIH HHS K08 DK093784
6 · The paper itself

Abstract

The trillions of beneficial commensal microorganisms that normally reside in the gastrointestinal tract have emerged as a critical source of environmentally-derived stimuli that can impact health and disease. However, the underlying cellular and molecular mechanisms that recognize commensal bacteria-derived signals and regulate mammalian homeostasis are just beginning to be defined. Highly coordinated epigenomic modifications allow mammals to alter the transcriptional program of a cell in response to environmental cues. These modifications may play a key role in regulating the dynamic relationship between mammals and their microbiota. We review recent advances in understanding the interplay between the microbiota and mammalian epigenomic pathways, and highlight emerging findings that implicate a central role for histone deacetylases (HDACs) in orchestrating host-microbiota interactions.

Indexed as

Epigenesis, GeneticEpigenomicsGene Expression RegulationMicrobiotaAnimalsBlood CellsCellular MicroenvironmentGastrointestinal TractGene-Environment InteractionHistone DeacetylasesHomeostasisHost-Pathogen InteractionsHumansIntestinal MucosaHistone Deacetylases

Identifiers

PMID25443494
PMCPMC4254645

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.