Evidence map›Paper›PMID 25442777›Full record

ArticleJournal of magnetic resonance (San Diego, Calif. : 1997)2014

Time-shared experiments for efficient assignment of triple-selectively labeled proteins.

Frank Löhr, Aisha Laguerre, Christoph Bock, Sina Reckel, Peter J Connolly, Norzehan Abdul-Manan, Franz Tumulka, Rupert Abele, Jonathan M Moore, Volker Dötsch

Abstract read
In one paragraph

Article in Journal of magnetic resonance (San Diego, Calif. : 1997), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Frank LöhrInstitute of Biophysical Chemistry & Center for Biomolecular Magnetic Resonance, Goethe University, Max-von-Laue-Str. 9, D-60438 Frankfurt, Germany.
Aisha LaguerreInstitute of Biophysical Chemistry & Center for Biomolecular Magnetic Resonance, Goethe University, Max-von-Laue-Str. 9, D-60438 Frankfurt, Germany.
Christoph BockInstitute of Biochemistry, Goethe University, Max-von-Laue-Str. 9, D-60438 Frankfurt, Germany.
Sina ReckelInstitute of Biophysical Chemistry & Center for Biomolecular Magnetic Resonance, Goethe University, Max-von-Laue-Str. 9, D-60438 Frankfurt, Germany.
Peter J ConnollyVertex Pharmaceuticals Inc., Cambridge, MA 02139, USA.
Norzehan Abdul-MananVertex Pharmaceuticals Inc., Cambridge, MA 02139, USA.
Franz TumulkaInstitute of Biochemistry, Goethe University, Max-von-Laue-Str. 9, D-60438 Frankfurt, Germany.
Rupert AbeleInstitute of Biochemistry, Goethe University, Max-von-Laue-Str. 9, D-60438 Frankfurt, Germany.
Jonathan M MooreVertex Pharmaceuticals Inc., Cambridge, MA 02139, USA.
Volker DötschInstitute of Biophysical Chemistry & Center for Biomolecular Magnetic Resonance, Goethe University, Max-von-Laue-Str. 9, D-60438 Frankfurt, Germany. Electronic address: vdoetsch@em.uni-frankfurt.de.

Funding

Synthetic Antigen Binder CoreU54GM087519 · NIGMS · UNIVERSITY OF CHICAGO · PI ZHOU, MING · 2010 to 2017
$31.9M
NIGMS NIH HHS U54 GM087519NIGMS NIH HHS U54GM087519
6 · The paper itself

Abstract

Combinatorial triple-selective labeling facilitates the NMR assignment process for proteins that are subject to signal overlap and insufficient signal-to-noise in standard triple-resonance experiments. Aiming at maximum amino-acid type and sequence-specific information, the method represents a trade-off between the number of selectively labeled samples that have to be prepared and the number of spectra to be recorded per sample. In order to address the demand of long measurement times, we here propose pulse sequences in which individual phase-shifted transients are stored separately and recombined later to produce several 2D HN(CX) type spectra that are usually acquired sequentially. Sign encoding by the phases of (13)C 90° pulses allows to either select or discriminate against (13)C' or (13)C(α) spins coupled to (15)N. As a result, (1)H-(15)N correlation maps of the various isotopomeric species present in triple-selectively labeled proteins are deconvoluted which in turn reduces problems due to spectral overlap. The new methods are demonstrated with four different membrane proteins with rotational correlation times ranging from 18 to 52 ns.

Indexed as

AlgorithmsSignal Processing, Computer-AssistedAmino Acid SequenceMagnetic Resonance SpectroscopyMembrane ProteinsMolecular Sequence DataPeptide MappingReproducibility of ResultsSensitivity and SpecificitySignal-To-Noise RatioSpin LabelsMembrane ProteinsSpin LabelsBEST-TROSYCell-free expressionDeuterationHadamard decodingIsotope labelingMembrane proteinsTriple-resonance NMR

Identifiers

PMID25442777
PMCPMC4254601

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.