Evidence map›Paper›PMID 25441720›Full record

ReviewTrends in cell biology2014

Long noncoding RNAs: an emerging link between gene regulation and nuclear organization.

Sofia Quinodoz, Mitchell Guttman

Open access · bronzeAbstract readReview
In one paragraph

Review in Trends in cell biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 177 papers.

0numbers the graph read from it
0cells of the map it votes in
177citing papers in PubMed
12.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

177 citing papers in PubMed, 319 citations in OpenAlex.

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  13. Insights into the evolution, virulence and speciation ofEmerging microbes & infections · 2024
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117 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Sofia QuinodozDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA.
Mitchell GuttmanDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA. Electronic address: mguttman@caltech.edu.
California Institute of Technology · US

Funding

Deciphering the mechanism of large ncRNA mediated regulation of cell stateDP5OD012190 · OD · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI GUTTMAN, MITCHELL · 2012 to 2016
$2.4M
NIH HHS DP5 OD012190
6 · The paper itself

Abstract

Mammalian genomes encode thousands of long noncoding RNAs (lncRNAs) that play important roles in diverse biological processes. As a class, lncRNAs are generally enriched in the nucleus and, specifically, within the chromatin-associated fraction. Consistent with their localization, many lncRNAs have been implicated in the regulation of gene expression and in shaping 3D nuclear organization. In this review, we discuss the evidence that many nuclear-retained lncRNAs can interact with various chromatin regulatory proteins and recruit them to specific sites on DNA to regulate gene expression. Furthermore, we discuss the role of specific lncRNAs in shaping nuclear organization and their emerging mechanisms. Based on these examples, we propose a model that explains how lncRNAs may shape aspects of nuclear organization to regulate gene expression.

Indexed as

Gene Expression RegulationAnimalsCell NucleusChromatinDNAHumansMammalsRNA, Long NoncodingChromatinDNARNA, Long Noncodingchromatin regulationgenome organizationlong noncoding RNA (lncRNA)nuclear domains

Identifiers

PMID25441720
PMCPMC4254690
OpenAlexW2049760108

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.