Evidence map›Paper›PMID 25441199›Full record

ArticleLancet (London, England)2014

The extant World War 1 dysentery bacillus NCTC1: a genomic analysis.

Kate S Baker, Alison E Mather, Hannah McGregor, Paul Coupland, Gemma C Langridge, Martin Day, Ana Deheer-Graham, Julian Parkhill, Julie E Russell, Nicholas R Thomson

Open access · hybridAbstract read
In one paragraph

Article in Lancet (London, England), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 43 citations in OpenAlex.

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  13. Epidemic characterization and molecular genotyping ofAntimicrobial resistance and infection control · 2017
    Article
  14. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Kate S BakerWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, UK.
Alison E MatherWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, UK.
Hannah McGregorNational Collection of Type Cultures, Public Health England, Porton Down, Salisbury, UK.
Paul CouplandWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, UK.
Gemma C LangridgeWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, UK.
Martin DayGastrointestinal Bacteria Reference Unit, Public Health England, London, UK.
Ana Deheer-GrahamNational Collection of Type Cultures, Public Health England, Porton Down, Salisbury, UK.
Julian ParkhillWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, UK.
Julie E RussellNational Collection of Type Cultures, Public Health England, Porton Down, Salisbury, UK.
Nicholas R ThomsonWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, UK; Department of Infectious and Tropical Diseases, London School of Hygiene & Tropical Medicine, London, UK. Electronic address: nrt@sanger.ac.uk.
Wellcome Sanger Institute · GBPublic Health England · GBLondon School of Hygiene & Tropical Medicine · GB

Funding

Wellcome TrustWellcome Trust 098051
6 · The paper itself

Abstract

backgroundShigellosis (previously bacillary dysentery) was the primary diarrhoeal disease of World War 1, but outbreaks still occur in military operations, and shigellosis causes hundreds of thousands of deaths per year in developing nations. We aimed to generate a high-quality reference genome of the historical Shigella flexneri isolate NCTC1 and to examine the isolate for resistance to antimicrobials.

methodsIn this genomic analysis, we sequenced the oldest extant Shigella flexneri serotype 2a isolate using single-molecule real-time (SMRT) sequencing technology. Isolated from a soldier with dysentery from the British forces fighting on the Western Front in World War 1, this bacterium, NCTC1, was the first isolate accessioned into the National Collection of Type Cultures. We created a reference sequence for NCTC1, investigated the isolate for antimicrobial resistance, and undertook comparative genetics with S flexneri reference strains isolated during the 100 years since World War 1.

findingsWe discovered that NCTC1 belonged to a 2a lineage of S flexneri, with which it shares common characteristics and a large core genome. NCTC1 was resistant to penicillin and erythromycin, and contained a complement of chromosomal antimicrobial resistance genes similar to that of more recent isolates. Genomic islands gained in the S flexneri 2a lineage over time were predominately associated with additional antimicrobial resistances, virulence, and serotype conversion.

interpretationThis S flexneri 2a lineage is a well adapted pathogen that has continued to respond to selective pressures. We have created a valuable historical benchmark for shigellae in the form of a high-quality reference sequence for a publicly available isolate.

fundingThe Wellcome Trust.

Indexed as

World War IAnti-Infective AgentsBase SequenceDrug Resistance, BacterialDysentery, BacillaryEvolution, MolecularGenome, BacterialHumansPhylogenyShigella flexneriAnti-Infective Agents

Identifiers

PMID25441199
PMCPMC4226921
OpenAlexW2133033562

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.