Evidence map›Paper›PMID 25439843›Full record

ArticleFertility and sterility2015

Genomic and genetic variation in E2F transcription factor-1 in men with nonobstructive azoospermia.

Carolina J Jorgez, Nathan Wilken, Josephine B Addai, Justin Newberg, Hima V Vangapandu, Alexander W Pastuszak, Sarmistha Mukherjee, Jill A Rosenfeld, Larry I Lipshultz, Dolores J Lamb

Open access · greenAbstract read
In one paragraph

Article in Fertility and sterility, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 34 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Carolina J JorgezCenter for Reproductive Medicine, Baylor College of Medicine, Houston, Texas; Scott Department of Urology, Baylor College of Medicine, Houston, Texas. Electronic address: cj129804@bcm.edu.
Nathan WilkenCenter for Reproductive Medicine, Baylor College of Medicine, Houston, Texas; Scott Department of Urology, Baylor College of Medicine, Houston, Texas.
Josephine B AddaiCenter for Reproductive Medicine, Baylor College of Medicine, Houston, Texas; Scott Department of Urology, Baylor College of Medicine, Houston, Texas.
Justin NewbergDepartment of Molecular and Cell Biology, Baylor College of Medicine, Houston, Texas.
Hima V VangapanduScott Department of Urology, Baylor College of Medicine, Houston, Texas.
Alexander W PastuszakCenter for Reproductive Medicine, Baylor College of Medicine, Houston, Texas; Scott Department of Urology, Baylor College of Medicine, Houston, Texas.
Sarmistha MukherjeeScott Department of Urology, Baylor College of Medicine, Houston, Texas.
Jill A RosenfeldSignature Genomic Laboratories, PerkinElmer, Inc., Spokane, Washington.
Larry I LipshultzCenter for Reproductive Medicine, Baylor College of Medicine, Houston, Texas; Scott Department of Urology, Baylor College of Medicine, Houston, Texas.
Dolores J LambCenter for Reproductive Medicine, Baylor College of Medicine, Houston, Texas; Scott Department of Urology, Baylor College of Medicine, Houston, Texas; Department of Molecular and Cell Biology, Baylor College of Medicine, Houston, Texas.
Baylor College of Medicine · USPerkinElmer (United States) · US

Funding

ZONA PELLUCIDA BINDING PROTEINS IN SPERM-EGG INTERACTIONSP01HD036289 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI BISHOP, COLIN EDWARD · 2000 to 2010
$7.5M
Multidisciplinary K12 Urologic Research (KURe) Career Development ProgramK12DK083014 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI LAMB, DOLORES JEAN · 2008 to 2017
$6.0M
Improving the Diagnosis of Congenital Genitourinary Defects.R01DK078121 · NIDDK · WEILL MEDICAL COLL OF CORNELL UNIV · PI LAMB, DOLORES JEAN · 2007 to 2021
$4.8M
K-12: Male Reproductive Health Research (MRHR) Career Development Program at BCMK12HD073917 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI LAMB, DOLORES JEAN · 2012 to 2016
$1.7M
NICHD NIH HHS K12 HD073917NICHD NIH HHS P01 HD036289NICHD NIH HHS P01HD36289NIDDK NIH HHS 1R01DK078121NIDDK NIH HHS K12 DK0083014NIDDK NIH HHS K12 DK083014NIDDK NIH HHS R01 DK078121Wellcome Trust
6 · The paper itself

Abstract

objectiveTo identify gene dosage changes associated with nonobstructive azoospermia (NOA) using array comparative genomic hybridization (aCGH).

designProspective study.

settingMedical school. PATIENT(S): One hundred ten men with NOA and 78 fertile controls. INTERVENTION(S): None. MAIN OUTCOME MEASURE(S): The study has four distinct analytic components: aCGH, a molecular karyotype that detects copy number variations (CNVs); Taqman CNV assays to validate CNVs; mutation identification by Sanger sequencing; and histological analyses of testicular tissues. RESULT(S): A microduplication at 20q11.22 encompassing E2F transcription factor-1 (E2F1) was identified in one of eight men with NOA analyzed using aCGH. CNVs were confirmed and in an additional 102 men with NOA screened using Taqman CNV assays, for a total of 110 NOA men analyzed for CNVs in E2F1. Eight of 110 (7.3%) NOA men had microduplications or microdeletions of E2F1 that were absent in fertile controls. CONCLUSION(S): E2F1 microduplications or microdeletions are present in men with NOA (7.3%). Duplications or deletions of E2F1 occur very rarely in the general population (0.011%), but E2F1 gene dosage changes, previously reported only in cancers, are present in a subset of NOA men. These results recapitulate the infertility phenotype seen in mice lacking or overexpressing E2f1.

Indexed as

AdultAnimalsAzoospermiaDNA Copy Number VariationsE2F1 Transcription FactorGenetic MarkersGenetic Predisposition to DiseaseGenetic VariationGenome, HumanHumansMaleMiceMutationPolymorphism, Single NucleotidePrevalenceRisk FactorsE2F1 protein, humanE2F1 Transcription FactorGenetic Markersarray comparative genomic hybridization (aCGH)Azoospermiacopy number variations (CNV)cryptorchidismE2F1infertilityNOA

Identifiers

PMID25439843
PMCPMC4282601
OpenAlexW2103399888

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.