Evidence map›Paper›PMID 25439725›Full record

ArticleAmerican journal of human genetics2014

Dosage changes of a segment at 17p13.1 lead to intellectual disability and microcephaly as a result of complex genetic interaction of multiple genes.

Claudia M B Carvalho, Shivakumar Vasanth, Marwan Shinawi, Chad Russell, Melissa B Ramocki, Chester W Brown, Jesper Graakjaer, Anne-Bine Skytte, Angela M Vianna-Morgante, Ana C V Krepischi and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 77 citations in OpenAlex.

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  20. Genetic Drivers of Kidney Defects in the DiGeorge Syndrome.The New England journal of medicine · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 8 institutions in 3 countries.

Claudia M B CarvalhoDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Centro de Pesquisas René Rachou - FIOCRUZ, Belo Horizonte, MG 30190-002, Brazil.
Shivakumar VasanthCenter for Human Disease Modeling, Duke University, Durham, NC 27710, USA.
Marwan ShinawiDepartment of Pediatrics, Division of Genetics and Genomic Medicine, Washington University in St Louis, St Louis, MO 63110-1093, USA.
Chad RussellCenter for Human Disease Modeling, Duke University, Durham, NC 27710, USA.
Melissa B RamockiDepartment of Pediatrics, Baylor College of Medicine, Houston, TX 77030, USA; Texas Children's Hospital, Houston, TX 77030, USA.
Chester W BrownDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Department of Pediatrics, Baylor College of Medicine, Houston, TX 77030, USA; Texas Children's Hospital, Houston, TX 77030, USA.
Jesper GraakjaerClinical Genetics Department, Vejle Hospital, Vejle 7100, Denmark.
Anne-Bine SkytteClinical Genetics Department, Vejle Hospital, Vejle 7100, Denmark.
Angela M Vianna-MorganteDepartment of Genetics & Evolutionary Biology, Biosciences Institute, University of São Paulo, São Paulo, SP 05508-090, Brazil.
Ana C V KrepischiDepartment of Genetics & Evolutionary Biology, Biosciences Institute, University of São Paulo, São Paulo, SP 05508-090, Brazil.
Gayle S PatelTexas Oncology, Austin, TX 78731, USA.
LaDonna ImmkenSpecially for Children, Austin, TX 78723, USA.
Kyrieckos AleckPhoenix Children's Hospital, Phoenix, AZ 85006, USA.
Cynthia LimPhoenix Children's Hospital, Phoenix, AZ 85006, USA.
Sau Wai CheungDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Carla RosenbergDepartment of Genetics & Evolutionary Biology, Biosciences Institute, University of São Paulo, São Paulo, SP 05508-090, Brazil.
Nicholas KatsanisCenter for Human Disease Modeling, Duke University, Durham, NC 27710, USA. Electronic address: nicholas.katsanis@dm.duke.edu.
James R LupskiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Department of Pediatrics, Baylor College of Medicine, Houston, TX 77030, USA; Texas Children's Hospital, Houston, TX 77030, USA. Electronic address: jlupski@bcm.edu.
Baylor College of Medicine · USDuke University · USUniversidade de São Paulo · BRPhoenix Children's Hospital · USVejle Sygehus · DKCenter for Children · USTexas Oncology · USWashington University in St. Louis · US

Funding

Baylor-Johns Hopkins Center for Mendelian GeneticsU54HG006542 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2012 to 2015
$15.6M
Steps towards a paternal gene activation therapy for Angelman syndromeU54HD083092 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI NELSON, DAVID LOREN, NEUL, JEFFREY L · 2014 to 2019
$7.8M
Nonrecurrent rearrangements, genome architecture and neurodegenerative disease.R01NS058529 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI LUPSKI, JAMES R. · 2009 to 2017
$5.0M
Pathophysiology of MECP2 Spectrum Disorders (Career Development Award Proposal)K08NS062711 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI RAMOCKI, MELISSA BETH · 2008 to 2012
$861k
NHGRI NIH HHS U54 HG006542NHGRI NIH HHS U54HG006542NICHD NIH HHS U54 HD083092NINDS NIH HHS 5K08NS062711NINDS NIH HHS K08 NS062711NINDS NIH HHS R01 NS058529
6 · The paper itself

Abstract

The 17p13.1 microdeletion syndrome is a recently described genomic disorder with a core clinical phenotype of intellectual disability, poor to absent speech, dysmorphic features, and a constellation of more variable clinical features, most prominently microcephaly. We identified five subjects with copy-number variants (CNVs) on 17p13.1 for whom we performed detailed clinical and molecular studies. Breakpoint mapping and retrospective analysis of published cases refined the smallest region of overlap (SRO) for microcephaly to a genomic interval containing nine genes. Dissection of this phenotype in zebrafish embryos revealed a complex genetic architecture: dosage perturbation of four genes (ASGR1, ACADVL, DVL2, and GABARAP) impeded neurodevelopment and decreased dosage of the same loci caused a reduced mitotic index in vitro. Moreover, epistatic analyses in vivo showed that dosage perturbations of discrete gene pairings induce microcephaly. Taken together, these studies support a model in which concomitant dosage perturbation of multiple genes within the CNV drive the microcephaly and possibly other neurodevelopmental phenotypes associated with rearrangements in the 17p13.1 SRO.

Indexed as

Abnormalities, MultipleAcyl-CoA Dehydrogenase, Long-ChainAdaptor Proteins, Signal TransducingAnimalsApoptosis Regulatory ProteinsAsialoglycoprotein ReceptorBase SequenceCell LineChromosome BreakpointsChromosome DeletionChromosomes, Human, Pair 17Dishevelled ProteinsFlow CytometryGene DosageHumansImmunohistochemistryACADVL protein, humanAcyl-CoA Dehydrogenase, Long-ChainAdaptor Proteins, Signal TransducingApoptosis Regulatory ProteinsASGR1 protein, humanAsialoglycoprotein ReceptorDishevelled ProteinsDVL2 protein, humanGABARAP protein, humanMicrotubule-Associated ProteinsPhosphoproteins

Identifiers

PMID25439725
PMCPMC4225592
OpenAlexW2052022243

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.