Evidence map›Paper›PMID 25439478›Full record

ArticleThe Journal of thoracic and cardiovascular surgery2015

Oxidant stress regulatory genetic variation in recipients and donors contributes to risk of primary graft dysfunction after lung transplantation.

Edward Cantu, Rupal J Shah, Wei Lin, Zhongyin J Daye, Joshua M Diamond, Yoshikazu Suzuki, John H Ellis, Catherine F Borders, Gerald A Andah, Ben Beduhn and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of thoracic and cardiovascular surgery, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 35 citations in OpenAlex.

  1. NADPH Oxidase 3: Beyond the Inner Ear.Antioxidants (Basel, Switzerland) · 2024
    Review
  2. Article
  3. Review
  4. Article
  5. Early Graft Dysfunction after Lung Transplantation.Current pulmonology reports · 2018
    Article
  6. Article
  7. Review
  8. The Perioperative Lung Transplant Virome: Torque Teno Viruses Are Elevated in Donor Lungs and Show Divergent Dynamics in Primary Graft Dysfunction.American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons · 2017
    Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Mechanisms of lung ischemia-reperfusion injury.Current opinion in organ transplantation · 2016
    Review
  14. Article
  15. One step closer to the elimination of primary graft dysfunction.The Journal of thoracic and cardiovascular surgery · 2015
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors at 2 institutions in 1 country.

Edward CantuCardiovascular Surgery Division, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pa. Electronic address: edward.cantu@uphs.upenn.edu.
Rupal J ShahPulmonary, Allergy, and Critical Care Division, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pa; Center for Clinical Epidemiology and Biostatistics, University of Pennsylvania Perelman School of Medicine, Division of Oncology, Philadelphia, Pa.
Wei LinCenter for Clinical Epidemiology and Biostatistics, University of Pennsylvania Perelman School of Medicine, Division of Oncology, Philadelphia, Pa.
Zhongyin J DayeCenter for Clinical Epidemiology and Biostatistics, University of Pennsylvania Perelman School of Medicine, Division of Oncology, Philadelphia, Pa.
Joshua M DiamondPulmonary, Allergy, and Critical Care Division, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pa; Center for Clinical Epidemiology and Biostatistics, University of Pennsylvania Perelman School of Medicine, Division of Oncology, Philadelphia, Pa.
Yoshikazu SuzukiCardiovascular Surgery Division, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pa.
John H EllisCardiovascular Surgery Division, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pa.
Catherine F BordersCardiovascular Surgery Division, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pa.
Gerald A AndahCardiovascular Surgery Division, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pa.
Ben BeduhnCardiovascular Surgery Division, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pa.
Nuala J MeyerPulmonary, Allergy, and Critical Care Division, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pa; Center for Clinical Epidemiology and Biostatistics, University of Pennsylvania Perelman School of Medicine, Division of Oncology, Philadelphia, Pa.
Melanie RuschefskiPulmonary, Allergy, and Critical Care Division, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pa; Center for Clinical Epidemiology and Biostatistics, University of Pennsylvania Perelman School of Medicine, Division of Oncology, Philadelphia, Pa.
Richard AplencCenter for Clinical Epidemiology and Biostatistics, University of Pennsylvania Perelman School of Medicine, Division of Oncology, Philadelphia, Pa; Division of Oncology, Department of Pediatrics, Children's Hospital of Philadelphia, Philadelphia, Pa.
Rui FengCenter for Clinical Epidemiology and Biostatistics, University of Pennsylvania Perelman School of Medicine, Division of Oncology, Philadelphia, Pa.
Jason D ChristiePulmonary, Allergy, and Critical Care Division, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pa; Center for Clinical Epidemiology and Biostatistics, University of Pennsylvania Perelman School of Medicine, Division of Oncology, Philadelphia, Pa.
Lung Transplant Outcomes Group Investigators
University of Pennsylvania · USChildren's Hospital of Philadelphia · US

Funding

Clinical Risk Factors for Primary Graft DysfunctionR01HL087115 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI CHRISTIE, JASON D · 2007 to 2017
$7.1M
Genetics of primary graft dysfunctionR01HL081619 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI CHRISTIE, JASON D · 2007 to 2011
$3.9M
Obesity, Inflammation, and Lung Injury After Lung TransplantationR01HL114626 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CHRISTIE, JASON D, LEDERER, DAVID J. · 2013 to 2016
$3.1M
Role of anti-Col (V) immunity in primary graft dysfunctionR01HL096845 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI CHRISTIE, JASON D, WILKES, DAVID S · 2010 to 2013
$2.2M
Career Development for Genomic/Genetic Studies in Lung DiseasesK12HL090021 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI PACK, ALLAN I · 2007 to 2012
$2.0M
GWAS Using Integrated CNV and SNP InformationR01GM088566 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI FENG, RUI · 2010 to 2013
$1.4M
Mentored Patient Oriented Research in Lung TransplantationK24HL115354 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI CHRISTIE, JASON D · 2012 to 2021
$1.2M
Lung Transplant donor: prediction, evaluation, and mechanismK23HL116656 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI CANTU, EDWARD · 2013 to 2017
$872k
Long Pentraxin-3 genomics and outcomes after lung transplantationK23HL121406 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI DIAMOND, JOSHUA M. · 2014 to 2017
$629k
NHLBI NIH HHS HL081619NHLBI NIH HHS HL087115NHLBI NIH HHS HL090021NHLBI NIH HHS HL096845NHLBI NIH HHS HL114626NHLBI NIH HHS HL115354NHLBI NIH HHS HL116656NHLBI NIH HHS K12 HL090021NHLBI NIH HHS K23 HL116656NHLBI NIH HHS K23 HL121406NHLBI NIH HHS K24 HL115354NHLBI NIH HHS R01 HL081619NHLBI NIH HHS R01 HL087115NHLBI NIH HHS R01 HL096845NHLBI NIH HHS R01 HL114626NIGMS NIH HHS R01 GM088566PHS HHS R0IGM088566
6 · The paper itself

Abstract

objectiveOxidant stress pathway activation during ischemia reperfusion injury may contribute to the development of primary graft dysfunction (PGD) after lung transplantation. We hypothesized that oxidant stress gene variation in recipients and donors is associated with PGD.

methodsDonors and recipients from the Lung Transplant Outcomes Group (LTOG) cohort were genotyped using the Illumina IBC chip filtered for oxidant stress pathway genes. Single nucleotide polymorphisms (SNPs) grouped into SNP sets based on haplotype blocks within 49 oxidant stress genes selected from gene ontology pathways and literature review were tested for PGD association using a sequencing kernel association test. Analyses were adjusted for clinical confounding variables and population stratification.

resultsThree hundred ninety-two donors and 1038 recipients met genetic quality control standards. Thirty percent of patients developed grade 3 PGD within 72 hours. Donor NADPH oxidase 3 (NOX3) was associated with PGD (P = .01) with 5 individual significant loci (P values between .006 and .03). In recipients, variation in glutathione peroxidase (GPX1) and NRF-2 (NFE2L2) was significantly associated with PGD (P = .01 for both). The GPX1 association included 3 individual loci (P values between .006 and .049) and the NFE2L2 association included 2 loci (P = .03 and .05). Significant epistatic effects influencing PGD susceptibility were evident between 3 different donor blocks of NOX3 and recipient NFE2L2 (P = .026, P = .017, and P = .031).

conclusionsOur study has prioritized GPX1, NOX3, and NFE2L2 genes for future research in PGD pathogenesis, and highlights a donor-recipient interaction of NOX3 and NFE2L2 that increases the risk of PGD.

Indexed as

Lung TransplantationPolymorphism, Single NucleotideAdultEpistasis, GeneticFemaleGenetic VariationGenotypeGlutathione PeroxidaseGlutathione Peroxidase GPX1HumansMaleMembrane ProteinsMiddle AgedNADPH OxidasesNF-E2-Related Factor 2Oxidative StressGlutathione PeroxidaseGlutathione Peroxidase GPX1GPX1 protein, humanMembrane ProteinsNADPH OxidasesNFE2L2 protein, humanNF-E2-Related Factor 2Nox3 protein, human

Identifiers

PMID25439478
PMCPMC4346512
OpenAlexW2067183392

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.