Evidence map›Paper›PMID 25439272›Full record

ReviewClinics in laboratory medicine2014

Microbiome, innate immunity, and esophageal adenocarcinoma.

Jonathan Baghdadi, Noami Chaudhary, Zhiheng Pei, Liying Yang

Open access · greenAbstract readReview
In one paragraph

Review in Clinics in laboratory medicine, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 29 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Review
  5. Review
  6. Review
  7. Article
  8. Review
  9. Article
  10. Review
  11. The Esophageal Microbiome in Health and Disease.Current gastroenterology reports · 2018
    Review
  12. The gut microbiota and gastrointestinal surgery.Nature reviews. Gastroenterology & hepatology · 2017
    Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Jonathan BaghdadiDepartment of Medicine, New York University School of Medicine, 550 1st Avenue, New York, NY 10016, USA.
Noami ChaudharyDepartment of Medicine, New York University School of Medicine, 550 1st Avenue, New York, NY 10016, USA.
Zhiheng PeiDepartment of Medicine, New York University School of Medicine, 550 1st Avenue, New York, NY 10016, USA; Department of Veterans Affairs New York Harbor Healthcare System, 423 East 23rd street, New York, NY 10010, USA; Department of Pathology, New York University School of Medicine, 550 1st Avenue, New York, NY 10016, USA.
Liying YangDepartment of Medicine, New York University School of Medicine, 550 1st Avenue, New York, NY 10016, USA. Electronic address: liying.yang@nyumc.org.
New York University · US

Funding

Foregut microbiome in development of esophageal adenocarcinomaUH3CA140233 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI NELSON, KAREN E., PEI, ZHIHENG · 2010 to 2014
$6.1M
The Oral Microbiome and Upper Aerodigestive Squamous Cell CancerR01CA159036 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI AHN, JIYOUNG, HAYES, RICHARD BERNARD · 2011 to 2024
$3.5M
Modulation of innate immunity,microbiome and HIV transmission by Depo-ProveraR01AI110372 · NIAID · RBHS-NEW JERSEY MEDICAL SCHOOL · PI CHANG, THERESA L, YANG, LIYING · 2013 to 2017
$3.0M
Oral microbiome in esophageal adenocarcinomaU01CA182370 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI AHN, JIYOUNG, PEI, ZHIHENG · 2014 to 2018
$2.7M
Arsenic Exposure, Gut Microbiome, and ArthrosclerosisR21ES023421 · NIEHS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI AHSAN, HABIBUL, CHEN, YU · 2014 to 2015
$653k
Gut Microbiome Profiles and Risk of Colorectal CancerR03CA159414 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI AHN, JIYOUNG, YANG, LIYING · 2012 to 2014
$219k
NCI NIH HHS R01 CA159036NCI NIH HHS R01CA159036NCI NIH HHS R03 CA159414NCI NIH HHS R03CA159414NCI NIH HHS U01CA18237NCI NIH HHS U01 CA182370NCI NIH HHS UH3 CA140233NCI NIH HHS UH3CA140233NIAID NIH HHS R01 AI110372NIAID NIH HHS R01AI110372NIEHS NIH HHS R21 ES023421NIEHS NIH HHS R21ES023421
6 · The paper itself

Abstract

With the development of culture-independent technique, a complex microbiome has been established and described in the distal esophagus. The incidence of esophageal adenocarcinoma (EAC) has increased dramatically in the United States. Studies documenting an altered microbiome associated with EAC and its precedents suggest that dysbiosis may be contributing to carcinogenesis, potentially mediated by interactions with toll-like receptors. Investigations attempting to associate viruses with EAC have not been as consistent. Currently available data are cross-sectional and therefore cannot prove causal relationships. Prospectively, microbiome studies open a new avenue to the understanding of the etiology and pathogenesis of reflux disorders and EAC.

Indexed as

Immunity, InnateMicrobiotaAdenocarcinomaAlphapapillomavirusBarrett EsophagusEsophageal NeoplasmsEsophagusHumansToll-Like ReceptorsToll-Like ReceptorsAdenocarcinomaBacteriaBarrett esophagusChronic inflammationInnate immunityMicrobiomeRefluxViruses

Identifiers

PMID25439272
PMCPMC4254553
OpenAlexW1973562488

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.