Evidence map›Paper›PMID 25437878›Full record

ArticleThe Journal of clinical investigation2015

Rare codons capacitate Kras-driven de novo tumorigenesis.

Nicole L K Pershing, Benjamin L Lampson, Jason A Belsky, Erin Kaltenbrun, David M MacAlpine, Christopher M Counter

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 78 citations in OpenAlex.

  1. RNA modifications in cancer and their detection: a review.Japanese journal of clinical oncology · 2026
    Review
  2. Article
  3. Review
  4. "Undruggable KRAS": druggable after all.Genes & development · 2025
    Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Review
  11. Article
  12. Computational Random Mutagenesis to Investigate RAS Mutant Signaling.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Nicole L K Pershing
Benjamin L Lampson
Jason A Belsky
Erin Kaltenbrun
David M MacAlpine
Christopher M Counter
Duke Medical Center · US

Funding

Women's Cancer Research ProgramP30CA014236 · NCI · DUKE UNIVERSITY · PI DONNA NIEDZWIECKI · 1985 to 2026
$174.8M
Computational Biology and Bioinformatics Training ProgramT32GM071340 · NIGMS · DUKE UNIVERSITY · PI MAGWENE, PAUL MITAARI · 2005 to 2020
$3.3M
The effect of oncogenic Ras signaling strength on cancerR01CA154630 · NCI · DUKE UNIVERSITY · PI COUNTER, CHRISTOPHER M · 2013 to 2016
$796k
Evaluating the impact of KRas codon bias on pancreatic cancerR03CA165927 · NCI · DUKE UNIVERSITY · PI COUNTER, CHRISTOPHER M · 2012 to 2013
$152k
NCI NIH HHS P30 CA014236NCI NIH HHS R01 CA154630NCI NIH HHS R01CA154630NCI NIH HHS R03 CA165927NCI NIH HHS R03CA165927NIGMS NIH HHS T32 GM071340
6 · The paper itself

Abstract

The KRAS gene is commonly mutated in human cancers, rendering the encoded small GTPase constitutively active and oncogenic. This gene has the unusual feature of being enriched for rare codons, which limit protein expression. Here, to determine the effect of the rare codon bias of the KRAS gene on de novo tumorigenesis, we introduced synonymous mutations that converted rare codons into common codons in exon 3 of the Kras gene in mice. Compared with control animals, mice with at least 1 copy of this Kras(ex3op) allele had fewer tumors following carcinogen exposure, and this allele was mutated less often, with weaker oncogenic mutations in these tumors. This reduction in tumorigenesis was attributable to higher expression of the Kras(ex3op) allele, which induced growth arrest when oncogenic and exhibited tumor-suppressive activity when not mutated. Together, our data indicate that the inherent rare codon bias of KRAS plays an integral role in tumorigenesis.

Indexed as

AdenomaAnimalsCarcinogenesisCell ProliferationCells, CulturedCodonFemaleHumansLung NeoplasmsMaleMice, 129 StrainMice, Inbred C57BLMice, TransgenicProto-Oncogene Proteins p21(ras)Tumor BurdenUrethaneCodonHras protein, mouseProto-Oncogene Proteins p21(ras)Urethane

Identifiers

PMID25437878
PMCPMC4382256
OpenAlexW2114694498

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.