Evidence map›Paper›PMID 25437801›Full record

ReviewPathogens (Basel, Switzerland)2014

Leptospiral pathogenomics.

Jason S Lehmann, Michael A Matthias, Joseph M Vinetz, Derrick E Fouts

Open access · goldAbstract readReview
In one paragraph

Review in Pathogens (Basel, Switzerland), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
7.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 115 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. TLR4 competence and mouse models of sublethal leptospirosis.PLoS neglected tropical diseases · 2025
    Article
  5. Article
  6. Genetic Characterization and Zoonotic Potential ofTropical medicine and infectious disease · 2025
    Article
  7. Comparative Genome Analysis of 25 Sri LankanEvolutionary bioinformatics online · 2025
    Article
  8. Article
  9. Article
  10. Review
  11. Are PathogenicTropical medicine and infectious disease · 2024
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Prevalence of human leptospirosis in the Americas: a systematic review and meta-analysis.Revista panamericana de salud publica = Pan American journal of public health · 2023
    Review
  17. Molecular and Serological Identification of PathogenicTransboundary and emerging diseases · 2023
    Article
  18. Article
  19. Comparison of the PF07598-Encoded Virulence-Modifying Proteins ofTropical medicine and infectious disease · 2022
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Jason S LehmannDivision of Infectious Diseases, Department of Medicine, University of California San Diego, School of Medicine, La Jolla, CA 92093-0741, USA. jslehman@ucsd.edu.
Michael A MatthiasDivision of Infectious Diseases, Department of Medicine, University of California San Diego, School of Medicine, La Jolla, CA 92093-0741, USA. mmatthias@ucsd.edu.
Joseph M VinetzDivision of Infectious Diseases, Department of Medicine, University of California San Diego, School of Medicine, La Jolla, CA 92093-0741, USA. joseph.vinetz@upch.pe.
Derrick E FoutsCraig Venter Institute, Rockville, MD 20850, USA. dfouts@jcvi.org.
University of California San Diego · USJ. Craig Venter Institute · USUniversidad Peruana Cayetano Heredia · PE

Funding

Mentoring Young Minds to Increase Diversity in the Biomedical ResearchR25GM083275 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DE MAIO, ANTONIO, LAWSON, MARK ANDREW · 2008 to 2022
$9.9M
Training Program in Basic Clinical GeneticsT32GM008666 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HAMILTON, BRUCE A · 1998 to 2021
$8.6M
Predicting Risk of Human Leptospiros by Environmental SurveillanceR01AI108276 · NIAID · YALE UNIVERSITY · PI VINETZ, JOSEPH M. · 2013 to 2017
$3.6M
Translational Research Development for Endemic Infectious Diseases of AmazoniaD43TW007120 · FIC · YALE UNIVERSITY · PI VINETZ, JOSEPH M. · 2004 to 2020
$3.0M
Leptospirosis Transmission in the Peruvian AmazonR01TW005860 · FIC · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI VINETZ, JOSEPH M. · 2002 to 2006
$2.4M
Microarray Analysis of Leptospiral GenomesR21AI064466 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI VINETZ, JOSEPH M. · 2006 to 2007
$491k
FIC NIH HHS D43 TW007120FIC NIH HHS R01 TW005860NIAID NIH HHS HHSN272200900007CNIAID NIH HHS R01 AI108276NIAID NIH HHS R21 AI064466NIGMS NIH HHS R25 GM083275NIGMS NIH HHS T32 GM008666
6 · The paper itself

Abstract

Leptospirosis, caused by pathogenic spirochetes belonging to the genus Leptospira, is a zoonosis with important impacts on human and animal health worldwide. Research on the mechanisms of Leptospira pathogenesis has been hindered due to slow growth of infectious strains, poor transformability, and a paucity of genetic tools. As a result of second generation sequencing technologies, there has been an acceleration of leptospiral genome sequencing efforts in the past decade, which has enabled a concomitant increase in functional genomics analyses of Leptospira pathogenesis. A pathogenomics approach, by coupling of pan-genomic analysis of multiple isolates with sequencing of experimentally attenuated highly pathogenic Leptospira, has resulted in the functional inference of virulence factors. The global Leptospira Genome Project supported by the U.S. National Institute of Allergy and Infectious Diseases to which key scientific contributions have been made from the international leptospirosis research community has provided a new roadmap for comprehensive studies of Leptospira and leptospirosis well into the future. This review describes functional genomics approaches to apply the data generated by the Leptospira Genome Project towards deepening our knowledge of virulence factors of Leptospira using the emerging discipline of pathogenomics.

Identifiers

PMID25437801
PMCPMC4243447
OpenAlexW4210995614

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.