Evidence map›Paper›PMID 25437540›Full record

ArticleCell reports2014

DNA copy-number control through inhibition of replication fork progression.

Jared T Nordman, Elena N Kozhevnikova, C Peter Verrijzer, Alexey V Pindyurin, Evgeniya N Andreyeva, Victor V Shloma, Igor F Zhimulev, Terry L Orr-Weaver

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 36 citations in OpenAlex.

  1. Finishing the egg.Genetics · 2024
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  3. eLife · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Jared T NordmanWhitehead Institute and Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02142, USA.
Elena N KozhevnikovaErasmus University Medical Centre, P.O. Box 1738, 3000 DR Rotterdam, the Netherlands; Institute of Cytology and Genetics, Siberian Branch of Russian Academy of Sciences, Lavrentyev Avenue 10, Novosibirsk 630090, Russia.
C Peter VerrijzerErasmus University Medical Centre, P.O. Box 1738, 3000 DR Rotterdam, the Netherlands.
Alexey V PindyurinNetherlands Cancer Institute, Plesmanlaan 121, 1066 CX Amsterdam, the Netherlands; Institute of Molecular and Cellular Biology, Siberian Branch of Russian Academy of Sciences, Lavrentyev Avenue 8/2, Novosibirsk 630090, Russia; Novosibirsk State University, Pirogova St. 2, Novosibirsk 630090, Russia.
Evgeniya N AndreyevaInstitute of Molecular and Cellular Biology, Siberian Branch of Russian Academy of Sciences, Lavrentyev Avenue 8/2, Novosibirsk 630090, Russia.
Victor V ShlomaInstitute of Molecular and Cellular Biology, Siberian Branch of Russian Academy of Sciences, Lavrentyev Avenue 8/2, Novosibirsk 630090, Russia.
Igor F ZhimulevInstitute of Molecular and Cellular Biology, Siberian Branch of Russian Academy of Sciences, Lavrentyev Avenue 8/2, Novosibirsk 630090, Russia; Novosibirsk State University, Pirogova St. 2, Novosibirsk 630090, Russia.
Terry L Orr-WeaverWhitehead Institute and Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02142, USA. Electronic address: weaver@wi.mit.edu.
Russian Academy of Sciences · RUErasmus University Rotterdam · NLMassachusetts Institute of Technology · USNovosibirsk State University · RU

Funding

REGULATION OF THE ENDO CELL CYCLE IN DROSOPHILAR01GM057960 · NIGMS · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI ORR-WEAVER, TERRY L. · 1999 to 2015
$5.3M
Regulation of metazoan DNA replication fork progression, stability and compositioK99GM104151 · NIGMS · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI NORDMAN, JARED · 2013 to 2014
$180k
NIGMS NIH HHS 1K99GM104151NIGMS NIH HHS GM57960NIGMS NIH HHS K99 GM104151NIGMS NIH HHS R01 GM057960
6 · The paper itself

Abstract

Proper control of DNA replication is essential to ensure faithful transmission of genetic material and prevent chromosomal aberrations that can drive cancer progression and developmental disorders. DNA replication is regulated primarily at the level of initiation and is under strict cell-cycle regulation. Importantly, DNA replication is highly influenced by developmental cues. In Drosophila, specific regions of the genome are repressed for DNA replication during differentiation by the SNF2 domain-containing protein SUUR through an unknown mechanism. We demonstrate that SUUR is recruited to active replication forks and mediates the repression of DNA replication by directly inhibiting replication fork progression instead of functioning as a replication fork barrier. Mass spectrometry identification of SUUR-associated proteins identified the replicative helicase member CDC45 as a SUUR-associated protein, supporting a role for SUUR directly at replication forks. Our results reveal that control of eukaryotic DNA copy number can occur through the inhibition of replication fork progression.

Indexed as

DNA ReplicationAnimalsDNA-Binding ProteinsDNA Copy Number VariationsDrosophila melanogasterDrosophila ProteinsGene DosageMass SpectrometryProtein BindingProtein Structure, TertiaryProtein TransportDNA-Binding ProteinsDrosophila ProteinsSuUR protein, Drosophila

Identifiers

PMID25437540
PMCPMC4366648
OpenAlexW2017237874

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.