Evidence map›Paper›PMID 25437055›Full record

ArticleEpigenetics2014

Genome-wide DNA methylation variability in adolescent monozygotic twins followed since birth.

Mélissa L Lévesque, Kevin F Casey, Moshe Szyf, Elmira Ismaylova, Victoria Ly, Marie-Pier Verner, Matthew Suderman, Mara Brendgen, Frank Vitaro, Ginette Dionne and 3 more

Abstract readTwin Study
In one paragraph

Article in Epigenetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  19. Environmental Deflection: The Impact of Toxicant Exposures on the Aging Epigenome.Toxicological sciences : an official journal of the Society of Toxicology · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Mélissa L Lévesquea CHU Sainte-Justine Research Center ; Montreal , Canada.
Kevin F Casey
Moshe Szyf
Elmira Ismaylova
Victoria Ly
Marie-Pier Verner
Matthew Suderman
Mara Brendgen
Frank Vitaro
Ginette Dionne
Michel Boivin
Richard E Tremblay
Linda Booij

Funding

Canadian Institutes of Health Research
6 · The paper itself

Abstract

DNA methylation patterns are characterized by highly conserved developmental programs, but allow for divergent gene expression resulting from stochastic epigenetic drift or divergent environments. Genome-wide methylation studies in monozygotic (MZ) twins are providing insight into the extent of epigenetic variation that occurs, irrespective of genotype. However, little is known about the variability of DNA methylation patterns in adolescence, a period involving significant and rapid physical, emotional, social, and neurodevelopmental change. Here, we assessed genome-wide DNA methylation using the 450 K Illumina BeadChip in a sample of 37 MZ twin pairs followed longitudinally since birth to investigate: 1) the extent of variation in DNA methylation in identical genetic backgrounds in adolescence and; 2) whether these variations are randomly distributed or enriched in particular functional pathways. We also assessed stability of DNA methylation over 3-6 months to distinguish stable trait-like and variable state-like genes. A pathway analysis found high within-pair variability in genes associated with development, cellular mechanisms, tissue and cell morphology, and various disorders. Test-retest analyses performed in a sub-sample of 8 twin pairs demonstrated enrichment in gene pathways involved in organismal development, cellular growth and proliferation, cell signaling, and particular disorders. The variability found in functional gene pathways may plausibly underlie phenotypic differences in this adolescent MZ twin sample. Furthermore, we assessed stability of methylation over 3-6 months and found that some genes were stable while others were unstable, suggesting that the methylome remains dynamic in adolescence and that dynamic sites tend to be organized in certain gene pathways.

Indexed as

DNA MethylationAdolescentFemaleHumansLongitudinal StudiesMaleTime FactorsTwins, MonozygoticCBMC, cord blood mononuclear cellsDNA methylationenvironmentepigeneticHLA, human leukocyte antigenHUVEC, human umbilical vascular endothelial cellsIPA, Ingenuity Pathway AnalysisK-SADS, Kiddie-Schedule for Affective Disorders and SchizophreniaMHC, major histocompatibility complexmonozygotic twinsMZ, monozygoticQNTS, Quebec Newborn Twin Studystabilitystate-traitvariabilitywhole-genome

Identifiers

PMID25437055
PMCPMC4622592

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.