Evidence map›Paper›PMID 25433341›Full record

ArticleThe Journal of biological chemistry2015

Insights into the role of the unusual disulfide bond in copper-zinc superoxide dismutase.

Kevin Sea, Se Hui Sohn, Armando Durazo, Yuewei Sheng, Bryan F Shaw, Xiaohang Cao, Alexander B Taylor, Lisa J Whitson, Stephen P Holloway, P John Hart and 3 more

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed.

  1. Review
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  12. Review
  13. Biochemical Analysis ofACS infectious diseases · 2022
    Article
  14. Review
  15. Article
  16. Article
  17. Tripartite Separation of Glomerular Cell Types and Proteomes from Reporter-Free Mice.Journal of the American Society of Nephrology : JASN · 2021
    Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Kevin SeaFrom the Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, the Department of Wine Studies, Santa Rosa Junior College, Santa Rosa, California 95401, kevinsea@yahoo.com.
Se Hui SohnFrom the Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, LG Chem, Ltd., Yuseong-gu, Daejeon 305-380, Korea.
Armando DurazoFrom the Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, the Department of Chemical and Environmental Engineering, University of Arizona, Tucson, Arizona 85721.
Yuewei ShengFrom the Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095.
Bryan F ShawFrom the Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, the Department of Chemistry and Biochemistry, Baylor University, Waco, Texas 76798.
Xiaohang Caothe Department of Biochemistry, University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229.
Alexander B Taylorthe Department of Biochemistry, University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229.
Lisa J Whitsonthe Department of Biochemistry, University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229.
Stephen P Hollowaythe Department of Biochemistry, University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229.
P John Hartthe Department of Biochemistry, University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229, the Department of Veterans Affairs, South Texas Veterans Health Care System, San Antonio, Texas 78229, and.
Diane E Cabellithe Chemistry Department, Brookhaven National Laboratory, Upton, New York 11973.
Edith Butler GrallaFrom the Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095.
Joan Selverstone ValentineFrom the Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, the Department of Bioinspired Science, Ewha Womans University, Seoul 120-750, Korea jsv@chem.ucla.edu.

Funding

CHEMISTRY BIOLOGY INTERFACE TRAINING PROGRAMT32GM008496 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI MAYNARD, HEATHER D · 1993 to 2019
$6.3M
FUNCTIONAL STUDIES OF CYTOSOLIC ANTIOXIDANT PROTEINSR01DK046828 · NIDDK · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI VALENTINE, JOAN SELVERSTONE · 1993 to 2010
$3.0M
X-RAY STUDIES OF SOD IN AMYOTROPHIC LATERAL SCLEROSISR01NS039112 · NINDS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI HART, PETER JOHN · 2000 to 2010
$2.7M
THE HISTIDYL IMIDAZOLE LIGAND IN METALLOPROTEINSR01GM028222 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI VALENTINE, JOAN SELVERSTONE · 1985 to 2005
$2.2M
Nascent SOD1 in Amyotrophic Lateral SclerosisI01BX000506 · VA · SOUTH TEXAS VETERANS HEALTH CARE SYSTEM · PI HART, PETER JOHN · 2009 to 2013
–
BLRD VA I01 BX000506NIDDK NIH HHS DK46828NIDDK NIH HHS R01 DK046828NIGMS NIH HHS GM08496NIGMS NIH HHS GM28222NIGMS NIH HHS R01 GM028222NIGMS NIH HHS T32 GM008496NINDS NIH HHS NS39112NINDS NIH HHS R01 NS039112
6 · The paper itself

Abstract

The functional and structural significance of the intrasubunit disulfide bond in copper-zinc superoxide dismutase (SOD1) was studied by characterizing mutant forms of human SOD1 (hSOD) and yeast SOD1 lacking the disulfide bond. We determined x-ray crystal structures of metal-bound and metal-deficient hC57S SOD1. C57S hSOD1 isolated from yeast contained four zinc ions per protein dimer and was structurally very similar to wild type. The addition of copper to this four-zinc protein gave properly reconstituted 2Cu,2Zn C57S hSOD, and its spectroscopic properties indicated that the coordination geometry of the copper was remarkably similar to that of holo wild type hSOD1. In contrast, the addition of copper and zinc ions to apo C57S human SOD1 failed to give proper reconstitution. Using pulse radiolysis, we determined SOD activities of yeast and human SOD1s lacking disulfide bonds and found that they were enzymatically active at ∼10% of the wild type rate. These results are contrary to earlier reports that the intrasubunit disulfide bonds in SOD1 are essential for SOD activity. Kinetic studies revealed further that the yeast mutant SOD1 had less ionic attraction for superoxide, possibly explaining the lower rates. Saccharomyces cerevisiae cells lacking the sod1 gene do not grow aerobically in the absence of lysine, but expression of C57S SOD1 increased growth to 30-50% of the growth of cells expressing wild type SOD1, supporting that C57S SOD1 retained a significant amount of activity.

Indexed as

Amyotrophic Lateral SclerosisApoproteinsCalorimetry, Differential ScanningDisulfidesElectron Spin Resonance SpectroscopyHumansMass SpectrometryMetalsMutant ProteinsMutationOxidative StressProtein BindingProtein ConformationSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSpectrometry, Mass, Electrospray IonizationApoproteinsDisulfidesMetalsMutant ProteinsSaccharomyces cerevisiae ProteinsSuperoxide DismutaseSuperoxidesZincAmyotrophic Lateral Sclerosis (ALS) (Lou Gehrig Disease)CopperDisulfideMetalloenzymeOxidative StressSuperoxide Dismutase (SOD)Superoxide IonZinc

Identifiers

PMID25433341
PMCPMC4303690

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.