ArticleBMC plant biology2014
Identification of candidate genes, regions and markers for pre-harvest sprouting resistance in wheat (Triticum aestivum L.).
Article in BMC plant biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.
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Who cites it
47 citing papers in PubMed, 107 citations in OpenAlex.
- Article
- Dissecting the genetic architecture of pre-harvest sprouting tolerance in Indian dwarf wheat (Triticum sphaerococcum) by multi-locus association analysis.Scientific reports · 2025Article
- QTL detection, validation, candidate genes and KASP markers for pre-harvest sprouting tolerance in white grained common wheat.BMC plant biology · 2025Article
- Genome-wide association study of pre-harvest sprouting resistance and grain color in common wheat (Triticum aestivum L.).BMC plant biology · 2025Article
- Breeding Wheat (Plants (Basel, Switzerland) · 2025Review
- Validation of QTLs for Resistance to Pre-Harvest Sprouting in a Panel of European Wheat Cultivars.Plants (Basel, Switzerland) · 2025Article
- Article
- Identification of Novel Loci Precisely Modulating Pre-Harvest Sprouting Resistance and Red Color Components of the Seed Coat inPlants (Basel, Switzerland) · 2024Article
- Preharvest Sprouting in Quinoa: A New Screening Method Adapted to Panicles and GWAS Components.Plants (Basel, Switzerland) · 2024Article
- Identification and validation of major and stable quantitative trait locus for falling number in common wheat (Triticum aestivum L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Genome-wide association mapping for pre-harvest sprouting in European winter wheat detects novel resistance QTL, pleiotropic effects, and structural variation in multiple genomes.The plant genome · 2024Article
- Genome-Wide Association Study of Preharvest Sprouting in Wheat.Methods in molecular biology (Clifton, N.J.) · 2024Article
- Genetics of a diverse soft winter wheat population for pre-harvest sprouting, agronomic, and flour quality traits.Frontiers in plant science · 2023Article
- Mapping quantitative trait loci and developing their KASP markers for pre-harvest sprouting resistance of Henan wheat varieties in China.Frontiers in plant science · 2023Article
- Genome-wide association mapping and genomic prediction for pre‑harvest sprouting resistance, low α-amylase and seed color in Iranian bread wheat.BMC plant biology · 2022Article
- Mapping pre-harvest sprouting resistance loci in AAC Innova × AAC Tenacious spring wheat population.BMC genomics · 2021Article
- Seed Dormancy and Pre-Harvest Sprouting in Rice-An Updated Overview.International journal of molecular sciences · 2021Review
- From Genetic Maps to QTL Cloning: An Overview for Durum Wheat.Plants (Basel, Switzerland) · 2021Review
- Genome-Wide Linkage Mapping for Preharvest Sprouting Resistance in Wheat Using 15K Single-Nucleotide Polymorphism Arrays.Frontiers in plant science · 2021Article
- Genetics of yield, abiotic stress tolerance and biofortification in wheat (Triticum aestivum L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Review
Corrections and comments
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Authors and funding
7 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundPre-harvest sprouting (PHS) of wheat grain leads to a reduction in grain yield and quality. The availability of markers for marker-assisted selection (MAS) of PHS resistance will serve to enhance breeding selection and advancement of lines for cultivar development. The aim of this study was to identify candidate regions and develop molecular markers for PHS resistance in wheat. This was achieved via high density mapping of single nucleotide polymorphism (SNP) markers from an Illumina 90 K Infinium Custom Beadchip in a doubled haploid (DH) population derived from a RL4452/'AC Domain' cross and subsequent detection of quantitative trait loci (QTL) for PHS related traits (falling number [FN], germination index [GI] and sprouting index [SI]). SNP marker sequences flanking QTL were used to locate colinear regions in Brachypodium and rice, and identify genic markers associated with PHS resistance that can be utilized for MAS in wheat.
resultsA linkage map spanning 2569.4 cM was constructed with a total of 12,201 SNP, simple sequence repeat (SSR), diversity arrays technology (DArT) and expressed sequence tag (EST) markers. QTL analyses using Multiple Interval Mapping (MIM) identified four QTL for PHS resistance traits on chromosomes 3B, 4A, 7B and 7D. Sequences of SNPs flanking these QTL were subject to a BLASTN search on the International Wheat Genome Sequencing Consortium (IWGSC) database (http://wheat-urgi.versailles.inra.fr/Seq-Repository). Best survey sequence hits were subject to a BLASTN search on Gramene (www.gramene.org) against both Brachypodium and rice databases, and candidate genes and regions for PHS resistance were identified. A total of 18 SNP flanking sequences on chromosomes 3B, 4A, 7B and 7D were converted to KASP markers and validated with matching genotype calls of Infinium SNP data.
conclusionsOur study identified candidate genes involved in abscissic acid (ABA) and gibberellin (GA) metabolism, and flowering time in four genomic regions of Brachypodium and rice respectively, in addition to 18 KASP markers for PHS resistance in wheat. These markers can be deployed in future genetic studies of PHS resistance and might also be useful in the evaluation of PHS in germplasm and breeding material.
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