Evidence map›Paper›PMID 25432440›Full record

ArticleHuman genetics2015

Using extended pedigrees to identify novel autism spectrum disorder (ASD) candidate genes.

Marc Woodbury-Smith, Andrew D Paterson, Bhooma Thiruvahindrapduram, Anath C Lionel, Christian R Marshall, Daniele Merico, Bridget A Fernandez, Eric Duku, James S Sutcliffe, Irene O'Conner and 14 more

Abstract read
PubMed Publisher
In one paragraph

Article in Human genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 25 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 9 institutions in 3 countries.

Marc Woodbury-SmithDepartment of Psychiatry and Behavioural Neurosciences, McMaster University, Chedoke Campus (Evel Building, Room 457), Hamilton, ON, Canada, woodbur@mcmaster.ca.
Andrew D Paterson
Bhooma Thiruvahindrapduram
Anath C Lionel
Christian R Marshall
Daniele Merico
Bridget A Fernandez
Eric Duku
James S Sutcliffe
Irene O'Conner
Christina Chrysler
Ann Thompson
Barbara Kellam
Kristiina Tammimies
Susan Walker
Ryan K C Yuen
Mohammed Uddin
Jennifer L Howe
Morgan Parlier
Kathy Whitten
Peter Szatmari
Veronica J Vieland
Joseph Piven
Stephen W Scherer
Hospital for Sick Children · CAMcMaster University · CAUniversity of North Carolina Wilmington · USAddiction Research Foundation · USMemorial · RUMemorial University of Newfoundland · CANationwide Children's Hospital · USUniversity of Toronto · CAVanderbilt University Medical Center · US

Funding

UNC MRDD Research CenterP30HD003110 · NICHD · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BELGER, AYSENIL · 1985 to 2012
$28.7M
Combining epidemiologic designs to model genetic risks for psychiatric disordersR01MH086117 · NIMH · RESEARCH INST NATIONWIDE CHILDREN'S HOSP · PI VIELAND, VERONICA J. · 2009 to 2011
$2.7M
A Molecular Genetic Study of Autism and Related Phenotypes in Extended PedigreesR01MH076028 · NIMH · UNIV OF NORTH CAROLINA CHAPEL HILL · PI PIVEN, JOSEPH · 2006 to 2010
$2.6M
Canadian Institutes of Health Research 79499Canadian Institutes of Health Research 89777NICHD NIH HHS HD003110NIMH NIH HHS MH076028NIMH NIH HHS MH086117
6 · The paper itself

Abstract

Copy number variation has emerged as an important cause of phenotypic variation, particularly in relation to some complex disorders. Autism spectrum disorder (ASD) is one such disorder, in which evidence is emerging for an etiological role for some rare penetrant de novo and rare inherited copy number variants (CNVs). De novo variation, however, does not always explain the familial nature of ASD, leaving a gap in our knowledge concerning the heritable genetic causes of this disorder. Extended pedigrees, in which several members have ASD, provide an opportunity to investigate inherited genetic risk factors. In this current study, we recruited 19 extended ASD pedigrees, and, using the Illumina HumanOmni2.5 BeadChip, conducted genome-wide CNV interrogation. We found no definitive evidence of an etiological role for segregating CNVs in these pedigrees, and no evidence that linkage signals in these pedigrees are explained by segregating CNVs. However, a small number of putative de novo variants were transmitted from BAP parents to their ASD offspring, and evidence emerged for a rare duplication CNV at 11p13.3 harboring two putative 'developmental/neuropsychiatric' susceptibility gene(s), GSTP1 and NDUFV1.

Indexed as

Gene DuplicationGenetic Predisposition to DiseasePedigreeChild Development Disorders, PervasiveChromosomes, Human, Pair 11Databases, Nucleic AcidDatasets as TopicElectron Transport Complex IFemaleGenetic LinkageGenome-Wide Association StudyGlutathione S-Transferase piHumansMaleNADH DehydrogenasePenetranceElectron Transport Complex IGlutathione S-Transferase piGSTP1 protein, humanNADH DehydrogenaseNDUFV1 protein, human

Identifiers

PMID25432440
OpenAlexW1998507915

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.