Evidence map›Paper›PMID 25432023›Full record

ArticleeLife2014

CED-3 caspase acts with miRNAs to regulate non-apoptotic gene expression dynamics for robust development in C. elegans.

Benjamin P Weaver, Rebecca Zabinsky, Yi M Weaver, Eui Seung Lee, Ding Xue, Min Han

Open access · goldAbstract read
In one paragraph

Article in eLife, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
  2. UBR-5 and UBE2D mediate timely exit from stem fate via destabilization of poly(A)-binding protein PABP-2 in cell state transition.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  3. Life science alliance · 2024
    Article
  4. Review
  5. Article
  6. Article
  7. Non-Canonical Roles of Apoptotic Caspases in the Nervous System.Frontiers in cell and developmental biology · 2022
    Review
  8. Non-Apoptotic Role of Apoptotic Caspases in theFrontiers in cell and developmental biology · 2022
    Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. The MakorineLife · 2019
    Article
  15. Article
  16. Review
  17. Review
  18. Review
  19. Genetics · 2018
    Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Benjamin P WeaverDepartment of Molecular, Cellular and Developmental Biology, University of Colorado Boulder, Boulder, United States.
Rebecca ZabinskyDepartment of Molecular, Cellular and Developmental Biology, University of Colorado Boulder, Boulder, United States.
Yi M WeaverDepartment of Molecular, Cellular and Developmental Biology, Howard Hughes Medical Institute, University of Colorado Boulder, Boulder, United States.
Eui Seung LeeDepartment of Molecular, Cellular and Developmental Biology, University of Colorado Boulder, Boulder, United States.
Ding XueDepartment of Molecular, Cellular and Developmental Biology, University of Colorado Boulder, Boulder, United States.
Min HanDepartment of Molecular, Cellular and Developmental Biology, Howard Hughes Medical Institute, University of Colorado Boulder, Boulder, United States.
University of Colorado Boulder · USHoward Hughes Medical Institute · US

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
TRAINING IN SIGNAL TRANSDUCTION &CELL CYCLE REGULATIONT32GM008759 · NIGMS · UNIVERSITY OF COLORADO AT BOULDER · PI AHN, NATALIE G. · 2000 to 2020
$5.9M
RAS MEDIATED SIGNAL TRANSDUCTION IN C. ELEGANSR01GM047869 · NIGMS · UNIVERSITY OF COLORADO AT BOULDER · PI HAN, MIN · 1992 to 2020
$5.0M
TARGETS OF THE CELL DEATH PROTEASESR01GM059083 · NIGMS · UNIVERSITY OF COLORADO AT BOULDER · PI XUE, DING · 1999 to 2012
$3.7M
Predoctoral Training Program in Signaling and Cellular Regulation INCLUDE Down Syndrome SupplementT32GM142607 · NIGMS · UNIVERSITY OF COLORADO · PI Sabrina Leigh Spencer, Tin Tin Su · 2021 to 2026
$3.6M
Howard Hughes Medical InstituteNIGMS NIH HHS 2T32GM008759-11NIGMS NIH HHS 5R01GM047869NIGMS NIH HHS R01 GM047869NIGMS NIH HHS R01 GM059083NIGMS NIH HHS R01GM059083NIGMS NIH HHS T32 GM008759NIGMS NIH HHS T32 GM142607NIH HHS P40 OD010440
6 · The paper itself

Abstract

Genetic redundancy and pleiotropism have limited the discovery of functions associated with miRNAs and other regulatory mechanisms. To overcome this, we performed an enhancer screen for developmental defects caused by compromising both global miRISC function and individual genes in Caenorhabditis elegans. Among 126 interactors with miRNAs, we surprisingly found the CED-3 caspase that has only been well studied for its role in promoting apoptosis, mostly through protein activation. We provide evidence for a non-apoptotic function of CED-3 caspase that regulates multiple developmental events through proteolytic inactivation. Specifically, LIN-14, LIN-28, and DISL-2 proteins are known miRNA targets, key regulators of developmental timing, and/or stem cell pluripotency factors involved in miRNA processing. We show CED-3 cleaves these proteins in vitro. We also show CED-3 down-regulates LIN-28 in vivo, possibly rendering it more susceptible to proteasomal degradation. This mechanism may critically contribute to the robustness of gene expression dynamics governing proper developmental control.

Indexed as

Gene Expression Regulation, DevelopmentalAmino Acid SequenceAnimalsApoptosisCaenorhabditis elegansCaenorhabditis elegans ProteinsCaspasesCell LineageEmbryonic DevelopmentEnhancer Elements, GeneticGenetic PleiotropyGenomeHumansLarvaMicroRNAsModels, BiologicalCaenorhabditis elegans ProteinsCaspasesced-3 protein, C elegansMicroRNAsRNA-Induced Silencing ComplexcaspaseC. elegansdevelopmental biologyDIS3L2GW182heterochronicLIN28miRNAstem cells

Identifiers

PMID25432023
PMCPMC4279084
OpenAlexW2162175499

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.