Evidence map›Paper›PMID 25431972›Full record

ArticleThe Biochemical journal2015

A directed-overflow and damage-control N-glycosidase in riboflavin biosynthesis.

Océane Frelin, Lili Huang, Ghulam Hasnain, James G Jeffryes, Michael J Ziemak, James R Rocca, Bing Wang, Jennifer Rice, Sanja Roje, Svetlana N Yurgel and 5 more

Open access · greenAbstract read
In one paragraph

Article in The Biochemical journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 49 citations in OpenAlex.

  1. Anaerobic riboflavin degradation by human gutJournal of bacteriology · 2026
    Article
  2. Anaerobic riboflavin degradation by human gutbioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Review
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  10. Apprehending the NADViruses · 2022
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  13. Application of Counter-wound Multi-arm Spirals in HTS Resonator Design.IEEE transactions on applied superconductivity : a publication of the IEEE Superconductivity Committee · 2022
    Article
  14. Article
  15. Progress Towards a Higher SensitivityIEEE transactions on applied superconductivity : a publication of the IEEE Superconductivity Committee · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 1 country.

Océane Frelin*Horticultural Sciences Department, University of Florida, Gainesville, FL 32611, U.S.A.
Lili Huang†Food Science and Human Nutrition Department, University of Florida, Gainesville, FL 32611, U.S.A.
Ghulam Hasnain*Horticultural Sciences Department, University of Florida, Gainesville, FL 32611, U.S.A.
James G Jeffryes‡Department of Chemical and Biological Engineering, Northwestern University, Evanston, IL 60208, U.S.A.
Michael J Ziemak*Horticultural Sciences Department, University of Florida, Gainesville, FL 32611, U.S.A.
James R Rocca║AMRIS Facility, McKnight Brain Institute, University of Florida, Gainesville, FL 32611, U.S.A.
Bing Wang¶Department of Biochemistry and Molecular Biology, University of Florida, Gainesville, FL 32611, U.S.A.
Jennifer Rice**Institute of Biological Chemistry, Washington State University, Pullman, WA 99164, U.S.A.
Sanja Roje**Institute of Biological Chemistry, Washington State University, Pullman, WA 99164, U.S.A.
Svetlana N Yurgel**Institute of Biological Chemistry, Washington State University, Pullman, WA 99164, U.S.A.
Jesse F Gregory†Food Science and Human Nutrition Department, University of Florida, Gainesville, FL 32611, U.S.A.
Arthur S Edison¶Department of Biochemistry and Molecular Biology, University of Florida, Gainesville, FL 32611, U.S.A.
Christopher S Henry§Mathematics and Computer Science Division, Argonne National Laboratory, Argonne, IL 60439, U.S.A.
Valérie de Crécy-Lagard‡‡Department of Microbiology and Cell Science, University of Florida, Gainesville, FL 32611, U.S.A.
Andrew D Hanson*Horticultural Sciences Department, University of Florida, Gainesville, FL 32611, U.S.A.
Argonne National Laboratory · USUniversity of Florida · US

Funding

Southeast Resource Center for Integrated Metabolomics (SECIM)U24DK097209 · NIDDK · UNIVERSITY OF FLORIDA · PI EDISON, ARTHUR S, YOST, RICHARD A. · 2013 to 2017
$9.2M
Vitamin B6 Effects on One-Carbon MetabolismR01DK072398 · NIDDK · UNIVERSITY OF FLORIDA · PI GREGORY, JESSE F. · 2005 to 2013
$3.3M
Improved NMR Technology for Natural Products and Metabolomics.R01EB009772 · NIBIB · UNIVERSITY OF FLORIDA · PI EDISON, ARTHUR S · 2009 to 2012
$1.6M
NIBIB NIH HHS R01 EB009772NIDDK NIH HHS 1U24DK097209-01A1NIDDK NIH HHS R01 DK072398NIDDK NIH HHS U24 DK097209
6 · The paper itself

Abstract

Plants and bacteria synthesize the essential human micronutrient riboflavin (vitamin B2) via the same multi-step pathway. The early intermediates of this pathway are notoriously reactive and may be overproduced in vivo because riboflavin biosynthesis enzymes lack feedback controls. In the present paper, we demonstrate disposal of riboflavin intermediates by COG3236 (DUF1768), a protein of previously unknown function that is fused to two different riboflavin pathway enzymes in plants and bacteria (RIBR and RibA respectively). We present cheminformatic, biochemical, genetic and genomic evidence to show that: (i) plant and bacterial COG3236 proteins cleave the N-glycosidic bond of the first two intermediates of riboflavin biosynthesis, yielding relatively innocuous products; (ii) certain COG3236 proteins are in a multi-enzyme riboflavin biosynthesis complex that gives them privileged access to riboflavin intermediates; and (iii) COG3236 action in Arabidopsis thaliana and Escherichia coli helps maintain flavin levels. COG3236 proteins thus illustrate two emerging principles in chemical biology: directed overflow metabolism, in which excess flux is diverted out of a pathway, and the pre-emption of damage from reactive metabolites.

Indexed as

Gene Expression Regulation, BacterialGene Expression Regulation, PlantArabidopsisBacterial ProteinsEscherichia coliIsoenzymesKineticsMaillard ReactionN-Glycosyl HydrolasesPlant ProteinsProtein Structure, TertiaryRiboflavinVibrio vulnificusZea maysBacterial ProteinsIsoenzymesN-Glycosyl HydrolasesPlant ProteinsRiboflavin

Identifiers

PMID25431972
PMCPMC4477702
OpenAlexW1979697329

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.