Evidence map›Paper›PMID 25431942›Full record

ReviewEpigenomics2014

Can genome engineering be used to target cancer-associated enhancers?

Matthew R Grimmer, Peggy J Farnham

Open access · greenAbstract readReview
In one paragraph

Review in Epigenomics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Review
  3. Association of Pioglitazone with Increased Risk of Prostate Cancer and Pancreatic Cancer: A Functional Network Study.Diabetes therapy : research, treatment and education of diabetes and related disorders · 2018
    Article
  4. Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Matthew R GrimmerNorris Comprehensive Cancer Center, Keck School of Medicine, University of Southern California, Los Angeles, CA 90089-9601, USA.
Peggy J Farnham
University of Southern California · US

Funding

Development of a nuclease-mediated technology to validate chromatin hubsR21HG006761 · NHGRI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI FARNHAM, PEGGY J · 2012 to 2013
$476k
NHGRI NIH HHS R21 HG006761
6 · The paper itself

Abstract

Transcriptional misregulation is involved in the development of many diseases, especially neoplastic transformation. Distal regulatory elements, such as enhancers, play a major role in specifying cell-specific transcription patterns in both normal and diseased tissues, suggesting that enhancers may be prime targets for therapeutic intervention. By focusing on modulating gene regulation mediated by cell type-specific enhancers, there is hope that normal epigenetic patterning in an affected tissue could be restored with fewer side effects than observed with treatments employing relatively nonspecific inhibitors such as epigenetic drugs. New methods employing genomic nucleases and site-specific epigenetic regulators targeted to specific genomic regions, using either artificial DNA-binding proteins or RNA-DNA interactions, may allow precise genome engineering at enhancers. However, this field is still in its infancy and further refinements that increase specificity and efficiency are clearly required.

Indexed as

Enhancer Elements, GeneticGenetic EngineeringGenomicsAnimalsBinding SitesEpigenesis, GeneticEpigenomicsGene Expression Regulation, NeoplasticHumansNeoplasmsOrgan SpecificityProtein BindingRegulatory Sequences, Nucleic AcidCRISPRsDNA methylationenhancersepigenetic therapygene expressiongenome engineeringgenomic nucleasehistone modificationsTALENsZFNs

Identifiers

PMID25431942
PMCPMC4259145
OpenAlexW2091523858

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.