Evidence map›Paper›PMID 25431570›Full record

ArticleFrontiers in microbiology2014

A bioassay for the detection of benzimidazoles reveals their presence in a range of environmental samples.

Terence S Crofts, Yujie Men, Lisa Alvarez-Cohen, Michiko E Taga

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 25 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Availability of vitamin BThe ISME journal · 2022
    Article
  5. Crystal structure, Hirshfeld and electronic transition analysis of 2-[(1Acta crystallographica. Section E, Crystallographic communications · 2021
    Article
  6. Review
  7. Flexible Cobamide Metabolism inJournal of bacteriology · 2020
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Facile isolation of α-ribazole from vitamin BJournal of chromatography. B, Analytical technologies in the biomedical and life sciences · 2018
    Article
  13. Metagenomics-guided analysis of microbial chemolithoautotrophic phosphite oxidation yields evidence of a seventh natural COProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  14. Article
  15. Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Terence S CroftsDepartment of Plant and Microbial Biology, University of California at Berkeley Berkeley, CA, USA.
Yujie MenDepartment of Civil and Environmental Engineering, University of California at Berkeley Berkeley, CA, USA.
Lisa Alvarez-CohenDepartment of Civil and Environmental Engineering, University of California at Berkeley Berkeley, CA, USA.
Michiko E TagaDepartment of Plant and Microbial Biology, University of California at Berkeley Berkeley, CA, USA.
University of California, Berkeley · US

Funding

Training CoreP42ES004705 · NIEHS · UNIVERSITY OF CALIFORNIA BERKELEY · PI CARDENAS, ANDRES · 1987 to 2025
$74.6M
Biosynthesis and Physiology of Vitamin B12 in ProkaryotesR00GM083343 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI TAGA, MICHIKO E. · 2009 to 2011
$740k
Biosynthesis and Physiology of Vitamin B12 in ProkaryotesK99GM083343 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI TAGA, MICHIKO E. · 2008 to 2009
$98k
NIEHS NIH HHS P42 ES004705NIGMS NIH HHS K99 GM083343NIGMS NIH HHS R00 GM083343
6 · The paper itself

Abstract

Cobamides are a family of enzyme cofactors that include vitamin B12 (cobalamin) and are produced solely by prokaryotes. Structural variability in the lower axial ligand has been observed in cobamides produced by diverse organisms. Of the three classes of lower ligands, the benzimidazoles are uniquely found in cobamides, whereas the purine and phenolic bases have additional biological functions. Many organisms acquire cobamides by salvaging and remodeling cobamides or their precursors from the environment. These processes require free benzimidazoles for incorporation as lower ligands, though the presence of benzimidazoles in the environment has not been previously investigated. Here, we report a new purification method and bioassay to measure the total free benzimidazole content of samples from microbial communities and laboratory media components. The bioassay relies on the "calcofluor-bright" phenotype of a bluB mutant of the model cobalamin-producing bacterium Sinorhizobium meliloti. The concentrations of individual benzimidazoles in these samples were measured by liquid chromatography-tandem mass spectrometry. Several benzimidazoles were detected in subpicomolar to subnanomolar concentrations in host-associated and environmental samples. In addition, benzimidazoles were found to be common contaminants of laboratory media components. These results suggest that benzimidazoles present in the environment and in laboratory media have the potential to influence microbial metabolic activities.

Indexed as

56-dimethylbenzimidazolebenzimidazolebioassaycobamideenvironmentS. melilotivitamin B12

Identifiers

PMID25431570
PMCPMC4230183
OpenAlexW2125955251

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.