Evidence map›Paper›PMID 25431404›Full record

ArticleJournal of biosciences2014

Phosphorylation of DegU is essential for activation of amyE expression in Bacillus subtilis.

Monica Gupta, K Krishnamurthy Rao

Abstract read
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In one paragraph

Article in Journal of biosciences, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Automation-aided construction and characterization ofFrontiers in bioengineering and biotechnology · 2024
    Article
  3. Regulating Pathways ofInternational journal of molecular sciences · 2023
    Article
  4. DegU-mediated suppression of carbohydrate uptake inApplied and environmental microbiology · 2023
    Article
  5. The impact of PrsA over-expression on theFrontiers in microbiology · 2022
    Article
  6. Review
  7. The DegU Orphan Response Regulator Contributes to Heat Stress Resistance inFrontiers in cellular and infection microbiology · 2021
    Article
  8. Article
  9. Article
  10. A novel expression vector for the secretion of abaecin in Bacillus subtilis.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology]
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Monica GuptaGene Regulation Lab, Department of Biosciences and Bioengineering, Indian Institute of Technology (IIT) Bombay,Powai, Mumbai 400 076, India, monica.gupta@health.ny.gov.
K Krishnamurthy Rao
Indian Institute of Technology Bombay · INIndian Institute of Technology Indore · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Alpha-amylase (amyE) is one of the major exo-enzymes secreted by Bacillus subtilis during the post-exponential phase. The DegS-DegU two-component system regulates expression of majority of post-exponentially expressed genes in B. subtilis. It has been demonstrated that varying levels of the phosphorylated form of DegU (DegU-P) control different cellular processes. Exo-protease production is observed when effective concentration of DegU-P rises in the cell, whereas swarming motility is favoured at very low amounts of DegU-P. In this study we show that like other exo-proteases, expression of amyE is positively regulated by increase in DegU-P levels in the cell. We also demonstrate that residues at the DNA-binding helix-turn-helix (HTH) motif of DegU are necessary for the amyE expression. This observation is further reinforced by demonstrating the direct interaction of DegU on amyE promoter.

Indexed as

alpha-AmylasesAmino Acid MotifsBacillus subtilisBacterial ProteinsBase SequenceGene Expression Regulation, BacterialGenes, BacterialMolecular Sequence DataPhosphorylationPromoter Regions, Geneticalpha-AmylasesBacterial ProteinsDegU protein, Bacteria

Identifiers

PMID25431404
OpenAlexW1964985689

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.