Evidence map›Paper›PMID 25430495›Full record

ArticleJournal of clinical pathology2015

Application of tissue mesodissection to molecular cancer diagnostics.

David Krizman, Nils Adey, Robert Parry

Open access · hybridAbstract readComparative StudyVideo-Audio Media
In one paragraph

Article in Journal of clinical pathology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Artificial intelligence-augmented histopathologic review using image analysis to optimize DNA yield from formalin-fixed paraffin-embedded slides.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2022
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

David KrizmanOncoPlex Diagnostics, Rockville, Maryland, USA.
Nils AdeyAvanSci Bio, Salt Lake City, Utah, USA.
Robert ParryAvanSci Bio, Salt Lake City, Utah, USA.
AvanSci Bio (United States) · USOncoPlex Diagnostics (United States) · US

Funding

Mesodissection Device Phase IIR44GM100645 · NIGMS · AVANSCI BIO, LLC · PI ADEY, NILS B · 2013 to 2013
$598k
NIGMS NIH HHS 2R44GM100645-02NIGMS NIH HHS R44 GM100645
6 · The paper itself

Abstract

aimsTo demonstrate clinical application of a mesodissection platform that was developed to combine advantages of laser-based instrumentation with the speed/ease of manual dissection for automated dissection of tissue off standard glass slides.

methodsGenomic analysis for KRAS gene mutation was performed on formalin fixed paraffin embedded (FFPE) cancer patient tissue that was dissected using the mesodissection platform. Selected reaction monitoring proteomic analysis for quantitative Her2 protein expression was performed on FFPE patient tumour tissue dissected by a laser-based instrument and the MilliSect instrument.

resultsGenomic analysis demonstrates highly confident detection of KRAS mutation specifically in lung cancer cells and not the surrounding benign, non-tumour tissue. Proteomic analysis demonstrates Her2 quantitative protein expression in breast cancer cells dissected manually, by laser-based instrumentation and by MilliSect instrumentation (mesodissection).

conclusionsSlide-mounted tissue dissection is commonly performed using laser-based instruments or manually scraping tissue by scalpel. Here we demonstrate that the mesodissection platform as performed by the MilliSect instrument for tissue dissection is cost-effective; it functions comparably to laser-based dissection and which can be adopted into a clinical diagnostic workflow.

Indexed as

Molecular Diagnostic TechniquesMutationAutomation, LaboratoryBiopsyBreast NeoplasmsDNA Mutational AnalysisEquipment DesignErb-b2 Receptor Tyrosine KinasesFemaleFixativesFormaldehydeHumansLaser Capture MicrodissectionLung NeoplasmsMaleParaffin EmbeddingERBB2 protein, humanErb-b2 Receptor Tyrosine KinasesFixativesFormaldehydeKRAS protein, humanProto-Oncogene ProteinsProto-Oncogene Proteins p21(ras)ras ProteinsCANCER GENETICSDIAGNOSTICSPROTEINS

Identifiers

PMID25430495
PMCPMC4316937
OpenAlexW2126129075

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.