Evidence map›Paper›PMID 25429466›Full record

ArticlePloS one2014

Proteomic analysis of highly prevalent amyloid A amyloidosis endemic to endangered island foxes.

Patricia M Gaffney, Denise M Imai, Deana L Clifford, Majid Ghassemian, Roman Sasik, Aaron N Chang, Timothy D O'Brien, Judith Coppinger, Margarita Trejo, Eliezer Masliah and 2 more

Abstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Systemic AA amyloidosis in the red fox (Vulpes vulpes).Protein science : a publication of the Protein Society · 2017
    Article
  8. Longitudinal study of experimental induction of AA amyloidosis in mice seeded with homologous and heterologous AA fibrils.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2016
    Article
  9. Article
  10. Polymorphism of Amyloid Fibrils In Vivo.Angewandte Chemie (International ed. in English) · 2016
    Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Patricia M GaffneyDepartments of Pathology and Medicine, University of California San Diego, La Jolla, California, United States of America; Department of Pathology, Immunology, and Microbiology, University of California Davis, Davis, California, United States of America.
Denise M ImaiDepartment of Pathology, Immunology, and Microbiology, University of California Davis, Davis, California, United States of America.
Deana L CliffordWildlife Investigations Laboratory, California Department of Fish and Wildlife, Rancho Cordova, California, United States of America; Department of Veterinary Medicine and Epidemiology, University of California Davis, Davis, California, United States of America.
Majid GhassemianDepartment of Chemistry and Biochemistry, University of California San Diego, La Jolla, California, United States of America.
Roman SasikCenter for Computational Biology, Institute for Genomic Medicine, University of California San Diego, La Jolla, California, United States of America.
Aaron N ChangCenter for Computational Biology, Institute for Genomic Medicine, University of California San Diego, La Jolla, California, United States of America.
Timothy D O'BrienVeterinary Population Medicine Department, Veterinary Diagnostic Laboratory, University of Minnesota, St. Paul, Minnesota, United States of America.
Judith CoppingerDepartments of Pathology and Medicine, University of California San Diego, La Jolla, California, United States of America.
Margarita TrejoDepartments of Pathology and Neuroscience, University of California San Diego, La Jolla, California, United States of America.
Eliezer MasliahDepartments of Pathology and Neuroscience, University of California San Diego, La Jolla, California, United States of America.
Linda MunsonDepartment of Pathology, Immunology, and Microbiology, University of California Davis, Davis, California, United States of America.
Christina SigurdsonDepartments of Pathology and Medicine, University of California San Diego, La Jolla, California, United States of America; Department of Pathology, Immunology, and Microbiology, University of California Davis, Davis, California, United States of America.

Funding

Project-002P30NS076411 · NINDS · SCINTILLON INSTITUTE FOR PHOTOBIOLOGY · PI LIPTON, STUART A · 2011 to 2016
$4.5M
a-synuclein clearance strategies for the treatment of Lewy body disease.R37AG018440 · NIA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MASLIAH, ELIEZER · 2006 to 2014
$2.7M
NIA NIH HHS R37 AG018440NINDS NIH HHS P30 NS076411
6 · The paper itself

Abstract

Amyloid A (AA) amyloidosis is a debilitating, often fatal, systemic amyloid disease associated with chronic inflammation and persistently elevated serum amyloid A (SAA). Elevated SAA is necessary but not sufficient to cause disease and the risk factors for AA amyloidosis remain poorly understood. Here we identify an extraordinarily high prevalence of AA amyloidosis (34%) in a genetically isolated population of island foxes (Urocyon littoralis) with concurrent chronic inflammatory diseases. Amyloid deposits were most common in kidney (76%), spleen (58%), oral cavity (45%), and vasculature (44%) and were composed of unbranching, 10 nm in diameter fibrils. Peptide sequencing by mass spectrometry revealed that SAA peptides were dominant in amyloid-laden kidney, together with high levels of apolipoprotein E, apolipoprotein A-IV, fibrinogen-α chain, and complement C3 and C4 (false discovery rate ≤ 0.05). Reassembled peptide sequences showed island fox SAA as an 111 amino acid protein, most similar to dog and artic fox, with 5 unique amino acid variants among carnivores. SAA peptides extended to the last two C-terminal amino acids in 5 of 9 samples, indicating that near full length SAA was often present in amyloid aggregates. These studies define a remarkably prevalent AA amyloidosis in island foxes with widespread systemic amyloid deposition, a unique SAA sequence, and the co-occurrence of AA with apolipoproteins.

Indexed as

FoxesAmino Acid SequenceAmyloidosisAnimalsBlood VesselsCaliforniaEndangered SpeciesFemaleIslandsKidneyMaleMolecular Sequence DataMouthPrevalenceProteomicsReproductive IsolationSerum Amyloid A Protein

Identifiers

PMID25429466
PMCPMC4245998

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.