Evidence map›Paper›PMID 25429106›Full record

ArticleThe Journal of biological chemistry2015

Expression, purification, and identification of associated proteins of the full-length hCDK12/CyclinK complex.

Bartlomiej Bartkowiak, Arno L Greenleaf

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 53 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. The Chronic Toxicity of Endocrine-Disrupting Chemical toInternational journal of molecular sciences · 2024
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Disrupting the Molecular Pathway in Myotonic Dystrophy.International journal of molecular sciences · 2021
    Review
  10. CDK9 keeps RNA polymerase II on track.Cellular and molecular life sciences : CMLS · 2021
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. CDK12: an emerging therapeutic target for cancer.Journal of clinical pathology · 2018
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Bartlomiej BartkowiakFrom the Department of Biochemistry, Duke University Medical Center, Durham, North Carolina 27710.
Arno L GreenleafFrom the Department of Biochemistry, Duke University Medical Center, Durham, North Carolina 27710 arno@duke.edu.
Duke Medical Center · USDuke University · US

Funding

TRANSCRIPTASE KINASES FROM YEAST AND DROSOPHILAR01GM040505 · NIGMS · DUKE UNIVERSITY · PI GREENLEAF, ARNO L. · 1988 to 2014
$5.1M
NIGMS NIH HHS GM040505NIGMS NIH HHS R01 GM040505
6 · The paper itself

Abstract

The coupling of transcription and associated processes has been shown to be dependent on the RNA polymerase II (RNAPII) C-terminal repeat domain (CTD) and the phosphorylation of the heptad repeats of which it is composed (consensus sequence Y1S2P3T4S5P6S7). Two primary S2 position CTD kinases have been identified in higher eukaryotes: P-TEFb and CDK12/CyclinK. The more recently discovered CDK12 appears to act at the 3'-end of the transcription unit and has been identified as a tumor suppressor for ovarian cancer; however much is still unknown about the in vivo roles of CDK12/CyclinK. In an effort to further characterize these roles we have purified to near homogeneity and characterized, full-length, active, human CDK12/CyclinK, and identified hCDK12-associated proteins via mass spectrometry. We find that employing a "2A" peptide-linked multicistronic construct containing CDK12 and CyclinK results in the efficient production of active, recombinant enzyme in the baculovirus/Sf9 expression system. Using GST-CTD fusion protein substrates we find that CDK12/CyclinK prefers a substrate with unmodified repeats or one that mimics prephosphorylation at the S7 position of the CTD; also the enzyme is sensitive to the inhibitor flavopiridol at higher concentrations. Identification of CDK12-associating proteins reveals a strong enrichment for RNA-processing factors suggesting that CDK12 affects RNA processing events in two distinct ways: Indirectly through generating factor-binding phospho-epitopes on the CTD of elongating RNAPII and directly through binding to specific factors.

Indexed as

Amino Acid SequenceBaculoviridaeCyclin-Dependent Kinase 2Cyclin-Dependent Kinase 9Cyclin-Dependent KinasesCyclinsDrug DiscoveryGlutathione TransferaseHeLa CellsHumansMass SpectrometryMolecular Sequence DataMutationPhosphorylationProtein BindingProtein Structure, TertiaryCCNK protein, humanCDK12 protein, humanCDK2 protein, humanCDK9 protein, humanCyclin-Dependent Kinase 2Cyclin-Dependent Kinase 9Cyclin-Dependent KinasesCyclinsGlutathione TransferaseRNAAnalog-sensitive KinaseBaculovirusC-terminal Domain (Carboxyl Tail Domain, CTD)Cyclin-dependent Kinase (CDK)Enzyme PurificationRNA Polymerase IIRNA Processing

Identifiers

PMID25429106
PMCPMC4340420
OpenAlexW2077044643

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.