ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2015
LTR retrotransposon dynamics in the evolution of the olive (Olea europaea) genome.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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Who cites it
21 citing papers in PubMed, 41 citations in OpenAlex.
- Genome evolution of Mediterranean olives following DNA repeats diversification.The plant genome · 2026Article
- Chitinase genes in olive tree (Frontiers in plant science · 2026Article
- Influence of Ty3/gypsy and Ty1/copia LTR-retrotransposons on the large genomes of Alstroemeriaceae: genome landscape of Bomarea edulis (Tussac) Herb.Protoplasma · 2025Article
- PlantLTRdb: An interactive database for 195 plant species LTR-retrotransposons.Frontiers in plant science · 2023Article
- Evolution of complex genome architecture in gymnosperms.GigaScience · 2022Article
- Understanding the Role ofBiology · 2022Article
- The Singular Evolution ofFrontiers in plant science · 2022Article
- Genome-Wide Identification and Development of LTR Retrotransposon-Based Molecular Markers for thePlants (Basel, Switzerland) · 2021Article
- Article
- Genome-wide analysis ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2020Article
- Physiological, epigenetic and genetic regulation in some olive cultivars under salt stress.Scientific reports · 2019Article
- The landscape of transposable elements and satellite DNAs in the genome of a dioecious plant spinach (Mobile DNA · 2019Article
- Specific LTR-Retrotransposons Show Copy Number Variations between Wild and Cultivated Sunflowers.Genes · 2018Article
- AOX1-Subfamily Gene Members in Olea europaea cv. "Galega Vulgar"-Gene Characterization and Expression of Transcripts during IBA-Induced in Vitro Adventitious Rooting.International journal of molecular sciences · 2018Article
- Intact DNA purified from flow-sorted nuclei unlocks the potential of next-generation genome mapping and assembly inMethodsX · 2018Article
- Recent developments in olive (Olea europaea L.) genetics and genomics: applications in taxonomy, varietal identification, traceability and breeding.Plant cell reports · 2017Review
- Genome-wide analysis of LTR-retrotransposon diversity and its impact on the evolution of the genus Helianthus (L.).BMC genomics · 2017Article
- Recessive male sterility in cabbage (Brassica oleracea var. capitata) caused by loss of function of BoCYP704B1 due to the insertion of a LTR-retrotransposon.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
- Identification and characterisation of Short Interspersed Nuclear Elements in the olive tree (Olea europaea L.) genome.Molecular genetics and genomics : MGG · 2017Article
- Repetitive DNA and Plant Domestication: Variation in Copy Number and Proximity to Genes of LTR-Retrotransposons among Wild and Cultivated Sunflower (Helianthus annuus) Genotypes.Genome biology and evolution · 2015Article
Corrections and comments
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Authors and funding
11 authors at 5 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Improved knowledge of genome composition, especially of its repetitive component, generates important information for both theoretical and applied research. The olive repetitive component is made up of two main classes of sequences: tandem repeats and retrotransposons (REs). In this study, we provide characterization of a sample of 254 unique full-length long terminal repeat (LTR) REs. In the sample, Ty1-Copia elements were more numerous than Ty3-Gypsy elements. Mapping a large set of Illumina whole-genome shotgun reads onto the identified retroelement set revealed that Gypsy elements are more redundant than Copia elements. The insertion time of intact retroelements was estimated based on sister LTR's divergence. Although some elements inserted relatively recently, the mean insertion age of the isolated retroelements is around 18 million yrs. Gypsy and Copia retroelements showed different waves of transposition, with Gypsy elements especially active between 10 and 25 million yrs ago and nearly inactive in the last 7 million yrs. The occurrence of numerous solo-LTRs related to isolated full-length retroelements was ascertained for two Gypsy elements and one Copia element. Overall, the results reported in this study show that RE activity (both retrotransposition and DNA loss) has impacted the olive genome structure in more ancient times than in other angiosperms.
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