Evidence map›Paper›PMID 25428220›Full record

ArticleBlood2015

Activating STAT6 mutations in follicular lymphoma.

Mehmet Yildiz, Hongxiu Li, Denzil Bernard, Nisar A Amin, Peter Ouillette, Siân Jones, Kamlai Saiya-Cork, Brian Parkin, Kathryn Jacobi, Kerby Shedden and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Blood, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed, 1 pooled it
8.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed, 1 synthesis or guideline pooled it, 143 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Audit of B-cell cancer genes.Blood advances · 2025
    Review
  8. Article
  9. Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Review
  20. Advances in the multi-omics landscape of follicular lymphoma.International journal of biological sciences · 2023
    Review

9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Mehmet YildizDepartment of Internal Medicine, Division of Hematology and Oncology, University of Michigan, Ann Arbor, MI;
Hongxiu LiDepartment of Internal Medicine, Division of Hematology and Oncology, University of Michigan, Ann Arbor, MI;
Denzil BernardDepartment of Internal Medicine, Division of Hematology and Oncology, University of Michigan, Ann Arbor, MI;
Nisar A AminDepartment of Internal Medicine, Division of Hematology and Oncology, University of Michigan, Ann Arbor, MI;
Peter OuilletteDepartment of Internal Medicine, Division of Hematology and Oncology, University of Michigan, Ann Arbor, MI;
Siân JonesPersonal Genome Diagnostics, Baltimore, MD;
Kamlai Saiya-CorkDepartment of Internal Medicine, Division of Hematology and Oncology, University of Michigan, Ann Arbor, MI;
Brian ParkinDepartment of Internal Medicine, Division of Hematology and Oncology, University of Michigan, Ann Arbor, MI;
Kathryn JacobiDepartment of Internal Medicine, Division of Hematology and Oncology, University of Michigan, Ann Arbor, MI;
Kerby SheddenDepartment of Statistics, and.
Shaomeng WangDepartment of Internal Medicine, Division of Hematology and Oncology, University of Michigan, Ann Arbor, MI;
Alfred E ChangDepartment of Surgery, University of Michigan, Ann Arbor, MI.
Mark S KaminskiDepartment of Internal Medicine, Division of Hematology and Oncology, University of Michigan, Ann Arbor, MI;
Sami N MalekDepartment of Internal Medicine, Division of Hematology and Oncology, University of Michigan, Ann Arbor, MI;
University of Michigan–Ann Arbor · USHuman Genome Sciences (United States) · US

Funding

The genomic pathogenesis of Follicular LymphomaR01CA190384 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MALEK, SAMI NIMER, WENDEL, HANS-GUIDO · 2015 to 2019
$2.7M
NCI NIH HHS R01 CA190384
6 · The paper itself

Abstract

Follicular lymphoma (FL) is the second most common non-Hodgkin lymphoma in the Western world. FL cell-intrinsic and cell-extrinsic factors influence FL biology and clinical outcome. To further our understanding of the genetic basis of FL, we performed whole-exome sequencing of 23 highly purified FL cases and 1 transformed FL case and expanded findings to a combined total of 114 FLs. We report recurrent mutations in the transcription factor STAT6 in 11% of FLs and identified the STAT6 amino acid residue 419 as a novel STAT6 mutation hotspot (p.419D/G, p.419D/A, and p.419D/H). FL-associated STAT6 mutations were activating, as evidenced by increased transactivation in HEK293T cell-based transfection/luciferase reporter assays, heightened interleukin-4 (IL-4) -induced activation of target genes in stable STAT6 transfected lymphoma cell lines, and elevated baseline expression levels of STAT6 target genes in primary FL B cells harboring mutant STAT6. Mechanistically, FL-associated STAT6 mutations facilitated nuclear residency of STAT6, independent of IL-4-induced STAT6-Y641 phosphorylation. Structural modeling of STAT6 based on the structure of the STAT1-DNA complex revealed that most FL-associated STAT6 mutants locate to the STAT6-DNA interface, potentially facilitating heightened interactions. The genetic and functional data combined strengthen the recognition of the IL-4/JAK/STAT6 axis as a driver of FL pathogenesis.

Indexed as

Gene Expression Regulation, NeoplasticMutation, MissenseActive Transport, Cell NucleusCell Line, TumorCell NucleusGenome-Wide Association StudyHEK293 CellsHumansInterleukin-4Janus KinasesLymphoma, FollicularNeoplasm ProteinsPhosphorylationSTAT6 Transcription FactorTranscriptional ActivationIL4 protein, humanInterleukin-4Janus KinasesNeoplasm ProteinsSTAT6 protein, humanSTAT6 Transcription Factor

Identifiers

PMID25428220
PMCPMC4729538
OpenAlexW2028578415

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.