Evidence map›Paper›PMID 25428145›Full record

ArticleJournal of clinical microbiology2015

Genomic dissection of travel-associated extended-spectrum-beta-lactamase-producing Salmonella enterica serovar typhi isolates originating from the Philippines: a one-off occurrence or a threat to effective treatment of typhoid fever?

Rene S Hendriksen, Pimlapas Leekitcharoenphon, Matthew Mikoleit, Jacob Dyring Jensen, Rolf Sommer Kaas, Louise Roer, Heena B Joshi, Srirat Pornruangmong, Chaiwat Pulsrikarn, Gladys D Gonzalez-Aviles and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of clinical microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 27 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Genomic surveillance of Salmonella spp. in the Philippines during 2013-2014.Transactions of the Royal Society of Tropical Medicine and Hygiene · 2022
    Article
  4. Article
  5. Observational
  6. Article
  7. Article
  8. Travel-Related Antimicrobial Resistance: A Systematic Review.Tropical medicine and infectious disease · 2021
    Review
  9. The Control of Typhoid Fever in Vietnam.The American journal of tropical medicine and hygiene · 2018
    Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 5 countries.

Rene S HendriksenTechnical University of Denmark, National Food Institute, WHO Collaborating Centre for Antimicrobial Resistance in Foodborne Pathogens and European Union Reference Laboratory for Antimicrobial Resistance, Kongens Lyngby, Denmark rshe@food.dtu.dk.
Pimlapas LeekitcharoenphonTechnical University of Denmark, National Food Institute, WHO Collaborating Centre for Antimicrobial Resistance in Foodborne Pathogens and European Union Reference Laboratory for Antimicrobial Resistance, Kongens Lyngby, Denmark.
Matthew MikoleitCenters for Disease Control and Prevention, National Center for Emerging and Zoonotic Infectious Diseases, Division of Foodborne, Waterborne, and Environmental Diseases, Enteric Diseases Laboratory Branch, Atlanta, Georgia, USA.
Jacob Dyring JensenTechnical University of Denmark, National Food Institute, WHO Collaborating Centre for Antimicrobial Resistance in Foodborne Pathogens and European Union Reference Laboratory for Antimicrobial Resistance, Kongens Lyngby, Denmark.
Rolf Sommer KaasTechnical University of Denmark, National Food Institute, WHO Collaborating Centre for Antimicrobial Resistance in Foodborne Pathogens and European Union Reference Laboratory for Antimicrobial Resistance, Kongens Lyngby, Denmark.
Louise RoerTechnical University of Denmark, National Food Institute, WHO Collaborating Centre for Antimicrobial Resistance in Foodborne Pathogens and European Union Reference Laboratory for Antimicrobial Resistance, Kongens Lyngby, Denmark.
Heena B JoshiCenters for Disease Control and Prevention, National Center for Emerging and Zoonotic Infectious Diseases, Division of Foodborne, Waterborne, and Environmental Diseases, Enteric Diseases Laboratory Branch, Atlanta, Georgia, USA.
Srirat PornruangmongNational Institute of Health, Department of Medical Sciences, WHO National Salmonella and Shigella Center, Ministry of Public Health, Bangkok, Thailand.
Chaiwat PulsrikarnNational Institute of Health, Department of Medical Sciences, WHO National Salmonella and Shigella Center, Ministry of Public Health, Bangkok, Thailand.
Gladys D Gonzalez-AvilesCenters for Disease Control and Prevention, National Center for Emerging and Zoonotic Infectious Diseases, Division of Foodborne, Waterborne, and Environmental Diseases, Enteric Diseases Laboratory Branch, Atlanta, Georgia, USA.
E Ascelijn ReulandMedical Microbiology and Infection Control, VU University Medical Center, Amsterdam, the Netherlands.
Nashwan Al NaiemiMedical Microbiology and Infection Control, VU University Medical Center, Amsterdam, the Netherlands Ziekenhuis Groep Twente, Amsterdam, the Netherlands.
Astrid Louise WesterNorwegian Institute of Public Health, Division of Infectious Disease Control, Department of Foodborne Infections, Oslo, Norway.
Frank M AarestrupTechnical University of Denmark, National Food Institute, WHO Collaborating Centre for Antimicrobial Resistance in Foodborne Pathogens and European Union Reference Laboratory for Antimicrobial Resistance, Kongens Lyngby, Denmark.
Henrik HasmanTechnical University of Denmark, National Food Institute, WHO Collaborating Centre for Antimicrobial Resistance in Foodborne Pathogens and European Union Reference Laboratory for Antimicrobial Resistance, Kongens Lyngby, Denmark.
Technical University of Denmark · DKAmsterdam UMC Location VUmc · NLMinistry of Public Health · THNational Center for Emerging and Zoonotic Infectious Diseases · USCenters for Disease Control and Prevention · USNorwegian Institute of Public Health · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

One unreported case of extended-spectrum-beta-lactamase (ESBL)-producing Salmonella enterica serovar Typhi was identified, whole-genome sequence typed, among other analyses, and compared to other available genomes of S. Typhi. The reported strain was similar to a previously published strain harboring blaSHV-12 from the Philippines and likely part of an undetected outbreak, the first of ESBL-producing S. Typhi.

Indexed as

Travelbeta-LactamasesDisease OutbreaksGenome, BacterialGenotypeHumansMolecular Sequence DataPhilippinesSalmonella typhiSequence Analysis, DNATyphoid Feverbeta-Lactamases

Identifiers

PMID25428145
PMCPMC4298498
OpenAlexW2160170897

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.