Evidence map›Paper›PMID 25426953›Full record

ArticlePloS one2014

Electricity-free amplification and detection for molecular point-of-care diagnosis of HIV-1.

Jered Singleton, Jennifer L Osborn, Lorraine Lillis, Kenneth Hawkins, Dylan Guelig, Will Price, Rachel Johns, Kelly Ebels, David Boyle, Bernhard Weigl and 1 more

Abstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 1 synthesis or guideline pooled it.

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  18. DetectingJournal of parasitic diseases : official organ of the Indian Society for Parasitology · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Jered SingletonPATH, Seattle, Washington, United States of America.
Jennifer L OsbornPATH, Seattle, Washington, United States of America.
Lorraine LillisPATH, Seattle, Washington, United States of America.
Kenneth HawkinsPATH, Seattle, Washington, United States of America.
Dylan GueligPATH, Seattle, Washington, United States of America.
Will PriceOregon Health and Science University School of Medicine, Portland, Oregon, United States of America.
Rachel JohnsPATH, Seattle, Washington, United States of America.
Kelly EbelsPATH, Seattle, Washington, United States of America.
David BoylePATH, Seattle, Washington, United States of America.
Bernhard WeiglPATH, Seattle, Washington, United States of America.
Paul LaBarrePATH, Seattle, Washington, United States of America.

Funding

CaO-heated DNA amplification obviates electricity requirement at point of careR01EB012641 · NIBIB · PATH · PI BURTON, ROBERT ANDREW · 2011 to 2013
$1.8M
Recombinase Polymerase Amplification for Point-of-Care Diagnosis of Infant HIV-1R01AI097038 · NIAID · PATH · PI BOYLE, DAVID SCOTT · 2011 to 2013
$1.2M
NIAID NIH HHS R01 AI097038NIAID NIH HHS R01AI097038NIBIB NIH HHS R01 EB012641
6 · The paper itself

Abstract

In resource-limited settings, the lack of decentralized molecular diagnostic testing and sparse access to centralized medical facilities can present a critical barrier to timely diagnosis, treatment, and subsequent control and elimination of infectious diseases. Isothermal nucleic acid amplification methods, including reverse transcription loop-mediated isothermal amplification (RT-LAMP), are well-suited for decentralized point-of-care molecular testing in minimal infrastructure laboratories since they significantly reduce the complexity of equipment and power requirements. Despite reduced complexity, however, there is still a need for a constant heat source to enable isothermal nucleic acid amplification. This requirement poses significant challenges for laboratories in developing countries where electricity is often unreliable or unavailable. To address this need, we previously developed a low-cost, electricity-free heater using an exothermic reaction thermally coupled with a phase change material. This heater achieved acceptable performance, but exhibited considerable variability. Furthermore, as an enabling technology, the heater was an incomplete diagnostic solution. Here we describe a more precise, affordable, and robust heater design with thermal standard deviation <0.5°C at operating temperature, a cost of approximately US$.06 per test for heater reaction materials, and an ambient temperature operating range from 16°C to 30°C. We also pair the heater with nucleic acid lateral flow (NALF)-detection for a visual readout. To further illustrate the utility of the electricity-free heater and NALF-detection platform, we demonstrate sensitive and repeatable detection of HIV-1 with a ß-actin positive internal amplification control from processed sample to result in less than 80 minutes. Together, these elements are building blocks for an electricity-free platform capable of isothermal amplification and detection of a variety of pathogens.

Indexed as

Point-of-Care SystemsElectricityEquipment DesignHIV-1HIV InfectionsHot TemperatureHumansNucleic Acid Amplification TechniquesRNA, ViralRNA, Viral

Identifiers

PMID25426953
PMCPMC4245218

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.