Evidence map›Paper›PMID 25426869›Full record

ArticlemAbs2014

Degradation of C-terminal tag sequences on domain antibodies purified from E. coli supernatant.

Simon Lykkemark, Ole Aalund Mandrup, Niels Anton Friis, Peter Kristensen

Open access · goldAbstract read
In one paragraph

Article in mAbs, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.3field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 14 citations in OpenAlex.

  1. A Novel Anti-CD47 Nanobody Tetramer for Cancer Therapy.Antibodies (Basel, Switzerland) · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Simon Lykkemarka Department of Clinical Medicine and Sino-Danish Center ; Aarhus University ; Aarhus , Denmark ;
Ole Aalund Mandrup
Niels Anton Friis
Peter Kristensen
Aarhus University · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Expression of recombinant proteins often takes advantage of peptide tags expressed in fusion to allow easy detection and purification of the expressed proteins. However, as the fusion peptides most often are flexible appendages at the N- or C-terminal, proteolytic cleavage may result in removal of the tag sequence. Here, we evaluated the functionality and stability of 14 different combinations of commonly used tags for purification and detection of recombinant antibody fragments. The tag sequences were inserted in fusion with the c-terminal end of a domain antibody based on the HEL4 scaffold in a phagemid vector. This particular antibody fragment was able to refold on the membrane after blotting, allowing us to detect c-terminal tag breakdown by use of protein A in combination with detection of the tags in the specific constructs. The degradation of the c-terminal tags suggested specific sites to be particularly prone to proteolytic cleavage, leaving some of the tag combinations partially or completely degraded. This specific work illustrates the importance of tag design with regard to recombinant antibody expression in E. coli, but also aids the more general understanding of protein expression.

Indexed as

AntibodiesBlotting, WesternElectrophoresis, Polyacrylamide GelEscherichia coliImmunoglobulin GModels, MolecularPeptidesProtein Structure, TertiaryProteolysisRecombinant Fusion ProteinsRecombinant ProteinsAntibodiesImmunoglobulin GPeptidesRecombinant Fusion ProteinsRecombinant ProteinsantibodiesdAb, domain antibodyDNA, deoxyribonucleic acidE. coli, escherichia coliHRP, horseradish peroxidaseIPTG, isopropyl β-D-1-thiogalactopyranosidePCR, polymerase chain reactionpeptide tagsphage displayprotein expressionproteolytic degradationRCF, relative centrifugal forcerpm, revolutions per minutescFv, single chain fragment variableTEV protease, tobacco etch virusTsp protease, tail-specific protease

Identifiers

PMID25426869
PMCPMC4622476
OpenAlexW2058654160

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.