Evidence map›Paper›PMID 25426125›Full record

ArticleFrontiers in plant science2014

Salicylic acid modulates levels of phosphoinositide dependent-phospholipase C substrates and products to remodel the Arabidopsis suspension cell transcriptome.

Eric Ruelland, Igor Pokotylo, Nabila Djafi, Catherine Cantrel, Anne Repellin, Alain Zachowski

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
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  3. Article
  4. Review
  5. Link between Lipid Second Messengers and Osmotic Stress in Plants.International journal of molecular sciences · 2021
    Review
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  7. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Eric RuellandUniversité Paris-Est Créteil, Institut d'Ecologie et des Sciences de l'Environnement de Paris Créteil, France ; Centre National de la Recherche Scientifique, Unité Mixte de Recherche 7618, Institut d'Ecologie et des Sciences de l'Environnement de Paris Créteil, France.
Igor PokotyloMolecular Mechanisms of Plant Cell Regulation, Institute of Bioorganic Chemistry and Petrochemistry, National Academy of Sciences Kyiv, Ukraine.
Nabila DjafiUniversité Paris-Est Créteil, Institut d'Ecologie et des Sciences de l'Environnement de Paris Créteil, France ; Centre National de la Recherche Scientifique, Unité Mixte de Recherche 7618, Institut d'Ecologie et des Sciences de l'Environnement de Paris Créteil, France.
Catherine CantrelUniversité Paris-Est Créteil, Institut d'Ecologie et des Sciences de l'Environnement de Paris Créteil, France ; Centre National de la Recherche Scientifique, Unité Mixte de Recherche 7618, Institut d'Ecologie et des Sciences de l'Environnement de Paris Créteil, France.
Anne RepellinUniversité Paris-Est Créteil, Institut d'Ecologie et des Sciences de l'Environnement de Paris Créteil, France ; Centre National de la Recherche Scientifique, Unité Mixte de Recherche 7618, Institut d'Ecologie et des Sciences de l'Environnement de Paris Créteil, France.
Alain ZachowskiUniversité Paris-Est Créteil, Institut d'Ecologie et des Sciences de l'Environnement de Paris Créteil, France ; Centre National de la Recherche Scientifique, Unité Mixte de Recherche 7618, Institut d'Ecologie et des Sciences de l'Environnement de Paris Créteil, France.
Université Paris-Est Créteil · FRInstitut d'écologie et des sciences de l'environnement de Paris · FRInstitute of Bioorganic Chemistry and Petrochemistry V.P. Kukhar · UA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Basal phosphoinositide-dependent phospholipase C (PI-PLC) activity controls gene expression in Arabidopsis suspension cells and seedlings. PI-PLC catalyzes the production of phosphorylated inositol and diacylglycerol (DAG) from phosphoinositides. It is not known how PI-PLC regulates the transcriptome although the action of DAG-kinase (DGK) on DAG immediately downstream from PI-PLC is responsible for some of the regulation. We previously established a list of genes whose expression is affected in the presence of PI-PLC inhibitors. Here this list of genes was used as a signature in similarity searches of curated plant hormone response transcriptome data. The strongest correlations obtained with the inhibited PI-PLC signature were with salicylic acid (SA) treatments. We confirm here that in Arabidopsis suspension cells SA treatment leads to an increase in phosphoinositides, then demonstrate that SA leads to a significant 20% decrease in phosphatidic acid, indicative of a decrease in PI-PLC products. Previous sets of microarray data were re-assessed. The SA response of one set of genes was dependent on phosphoinositides. Alterations in the levels of a second set of genes, mostly SA-repressed genes, could be related to decreases in PI-PLC products that occur in response to SA action. Together, the two groups of genes comprise at least 40% of all SA-responsive genes. Overall these two groups of genes are distinct in the functional categories of the proteins they encode, their promoter cis-elements and their regulation by DGK or phospholipase D. SA-regulated genes dependent on phosphoinositides are typical SA response genes while those with an SA response that is possibly dependent on PI-PLC products are less SA-specific. We propose a model in which SA inhibits PI-PLC activity and alters levels of PI-PLC products and substrates, thereby regulating gene expression divergently.

Indexed as

Arabidopsisdiacylglycerol kinasehormone transductionlipid signalingphospholipase Csalicylic acidtrancriptomic

Identifiers

PMID25426125
PMCPMC4227474
OpenAlexW2052117579

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.