Evidence map›Paper›PMID 25425647›Full record

ArticleThe Journal of biological chemistry2015

Evidence for an elevated aspartate pK(a) in the active site of human aromatase.

Giovanna Di Nardo, Maximilian Breitner, Andrea Bandino, Debashis Ghosh, Gareth K Jennings, John C Hackett, Gianfranco Gilardi

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
  2. Roles of Ferric Peroxide Anion Intermediates (FeAngewandte Chemie (International ed. in English) · 2024
    Article
  3. Article
  4. A Theoretical Study of Organotin Binding in Aromatase.International journal of molecular sciences · 2023
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Molecular and Structural Evolution of Cytochrome P450 Aromatase.International journal of molecular sciences · 2021
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Testosterone complex and non-steroidal ligands of human aromatase.The Journal of steroid biochemistry and molecular biology · 2018
    Article
  17. Recent Structural Insights into Cytochrome P450 Function.Trends in pharmacological sciences · 2016
    Review
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Giovanna Di NardoFrom the Department of Life Sciences and Systems Biology, University of Torino, via Accademia Albertina 13, 10123 Torino, Italy.
Maximilian BreitnerFrom the Department of Life Sciences and Systems Biology, University of Torino, via Accademia Albertina 13, 10123 Torino, Italy.
Andrea BandinoFrom the Department of Life Sciences and Systems Biology, University of Torino, via Accademia Albertina 13, 10123 Torino, Italy.
Debashis Ghoshthe Department of Pharmacology, SUNY Upstate Medical University, Syracuse, New York 13210, and.
Gareth K Jenningsthe Department of Physiology and Biophysics and the Massey Cancer Center, Virginia Commonwealth University School of Medicine, Richmond, Virginia 23219.
John C Hackettthe Department of Physiology and Biophysics and the Massey Cancer Center, Virginia Commonwealth University School of Medicine, Richmond, Virginia 23219 jchackett@vcu.edu.
Gianfranco GilardiFrom the Department of Life Sciences and Systems Biology, University of Torino, via Accademia Albertina 13, 10123 Torino, Italy, gianfranco.gilardi@unito.it.
Accademia Albertina delle Belle Arti · ITVirginia Commonwealth University · USSUNY Upstate Medical University · US

Funding

Structure and Function of Integral Membrane Enzyme Human AromataseR01GM086893 · NIGMS · UPSTATE MEDICAL UNIVERSITY · PI GHOSH, DEBASHIS · 2009 to 2012
$1.8M
Enzyme Environmental Effects in Complex Cytochrome P450-Catalyzed ReactionsR01GM092827 · NIGMS · VIRGINIA COMMONWEALTH UNIVERSITY · PI HACKETT, JOHN C · 2010 to 2014
$1.5M
NIGMS NIH HHS R01 GM086893NIGMS NIH HHS R01GM086893NIGMS NIH HHS R01 GM092827NIGMS NIH HHS R01GM092827
6 · The paper itself

Abstract

Aromatase (CYP19A1), the enzyme that converts androgens to estrogens, is of significant mechanistic and therapeutic interest. Crystal structures and computational studies of this enzyme shed light on the critical role of Asp(309) in substrate binding and catalysis. These studies predicted an elevated pK(a) for Asp(309) and proposed that protonation of this residue was required for function. In this study, UV-visible absorption, circular dichroism, resonance Raman spectroscopy, and enzyme kinetics were used to study the impact of pH on aromatase structure and androstenedione binding. Spectroscopic studies demonstrate that androstenedione binding is pH-dependent, whereas, in contrast, the D309N mutant retains its ability to bind to androstenedione across the entire pH range studied. Neither pH nor mutation perturbed the secondary structure or heme environment. The origin of the observed pH dependence was further narrowed to the protonation equilibria of Asp(309) with a parallel set of spectroscopic studies using exemestane and anastrozole. Because exemestane interacts with Asp(309) based on its co-crystal structure with the enzyme, its binding is pH-dependent. Aromatase binding to anastrozole is pH-independent, consistent with the hypothesis that this ligand exploits a distinct set of interactions in the active site. In summary, we assign the apparent pK(a) of 8.2 observed for androstenedione binding to the side chain of Asp(309). To our knowledge, this work represents the first experimental assignment of a pK(a) value to a residue in a cytochrome P450. This value is in agreement with theoretical calculations (7.7-8.1) despite the reliance of the computational methods on the conformational snapshots provided by crystal structures.

Indexed as

MutationProtein ConformationAndrogensAromataseAspartic AcidCatalysisCatalytic DomainCrystallography, X-RayEstrogensHumansOxidation-ReductionSpectrum Analysis, RamanAndrogensAromataseAspartic AcidCYP19A1 protein, humanEstrogensAromataseAspartate (Aspartic Acid)Cytochrome P450Enzyme CatalysisEstrogenHemepKaSteroid

Identifiers

PMID25425647
PMCPMC4294484
OpenAlexW2085444960

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.