Evidence map›Paper›PMID 25424564›Full record

ArticleToxicological sciences : an official journal of the Society of Toxicology2015

Role of pregnane X receptor and aryl hydrocarbon receptor in transcriptional regulation of pxr, CYP2, and CYP3 genes in developing zebrafish.

Akira Kubota, Jared V Goldstone, Benjamin Lemaire, Matthew Takata, Bruce R Woodin, John J Stegeman

Open access · bronzeAbstract read
In one paragraph

Article in Toxicological sciences : an official journal of the Society of Toxicology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
8.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 70 citations in OpenAlex.

  1. Review
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  9. Review
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  11. A Review of the Functional Roles of the Zebrafish Aryl Hydrocarbon Receptors.Toxicological sciences : an official journal of the Society of Toxicology · 2020
    Review
  12. Article
  13. Article
  14. Article
  15. Sequence Variations in pxr (nr1i2) From Zebrafish (Danio rerio) Strains Affect Nuclear Receptor Function.Toxicological sciences : an official journal of the Society of Toxicology · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Akira KubotaBiology Department, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts 02543.
Jared V GoldstoneBiology Department, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts 02543.
Benjamin LemaireBiology Department, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts 02543.
Matthew TakataBiology Department, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts 02543.
Bruce R WoodinBiology Department, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts 02543.
John J StegemanBiology Department, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts 02543 jstegeman@whoi.edu.
Woods Hole Oceanographic Institution · US

Funding

Training CoreP42ES007381 · NIEHS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI SHERR, DAVID H · 1995 to 2019
$46.1M
CYP Genes and the Generation of Oxidative StressR01ES015912 · NIEHS · WOODS HOLE OCEANOGRAPHIC INSTITUTION · PI STEGEMAN, JOHN J · 2007 to 2011
$3.1M
TALENs-based PXR Knockout and Humanized ZebrafishR21HD073805 · NICHD · WOODS HOLE OCEANOGRAPHIC INSTITUTION · PI GOLDSTONE, JARED VERRILL · 2013 to 2014
$454k
NICHD NIH HHS R21 HD073805NICHD NIH HHS R21HD073805NIEHS NIH HHS 5P42ES007381NIEHS NIH HHS P42 ES007381NIEHS NIH HHS R01ES015912
6 · The paper itself

Abstract

Ligand-activated receptors regulate numerous genes, and mediate effects of a broad set of endogenous and exogenous chemicals in vertebrates. Understanding the roles of these transcription factors in zebrafish (Danio rerio) is important to the use of this non-mammalian model in toxicological, pharmacological, and carcinogenesis research. Response to a potential agonist for the pregnane X receptor (Pxr) [pregnenolone (PN)] was examined in developing zebrafish, to assess involvement of Pxr in regulation of selected genes, including genes in cytochrome P450 subfamilies CYP2 and CYP3. We also examined interaction of Pxr and the aryl hydrocarbon receptor (Ahr) signaling pathways. Pregnenolone caused a dose-dependent increase in mRNA levels of pxr, ahr2, CYP1A, CYP2AA1, CYP2AA12, CYP3A65, and CYP3C1, most of which peaked at 3 µM PN. The well-known Ahr agonist 3,3',4,4',5-pentachlorobiphenyl (PCB126) also upregulated expression of pxr, ahr2, CYP1A, CYP2AA12, CYP3A65, and CYP3C1 in a dose-dependent manner. Inhibition of pxr translation by morpholino antisense oligonucleotides (MO) suppressed PN-induced expression of pxr, ahr2, CYP3A65, and CYP3C1 genes. Levels of CYP2AA1 and CYP2AA12 mRNA were increased in the control-MO group exposed to PN; this was prevented by knocking down Pxr. Similarly, Ahr2-MO treatment blocked PCB126-induced mRNA expression of pxr, CYP1A, CYP2AA12, CYP3A65, and CYP3C1. The present study shows self-regulation of pxr by PN in developing zebrafish. Selected zebrafish CYP1, CYP2 (including several CYP2AAs) and CYP3 genes appear to be under the regulation of both Pxr and Ahr2.

Indexed as

Gene Expression Regulation, DevelopmentalGene Expression Regulation, EnzymologicAnimalsCytochrome P-450 Enzyme SystemDose-Response Relationship, DrugEmbryonic DevelopmentGene Knockdown TechniquesPolychlorinated BiphenylsPregnane X ReceptorPregnenoloneReceptors, Aryl HydrocarbonReceptors, SteroidTranscriptional ActivationZebrafishZebrafish Proteins3,4,5,3',4'-pentachlorobiphenylAHR2 protein, zebrafishCytochrome P-450 Enzyme SystemPolychlorinated BiphenylsPregnane X ReceptorPregnenoloneReceptors, Aryl HydrocarbonReceptors, SteroidZebrafish Proteinsaryl hydrocarbon receptorcytochrome P450polychlorinated biphenylpregnane X receptorzebrafish

Identifiers

PMID25424564
PMCPMC4306721
OpenAlexW2119882323

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.