Evidence map›Paper›PMID 25424124›Full record

ArticleOrphanet journal of rare diseases2014

Genomic screening of testicular germ cell tumors from monozygotic twins.

Sara Martoreli Silveira, Isabela Werneck da Cunha, Fabio Albuquerque Marchi, Ariane Fidelis Busso, Ademar Lopes, Silvia Regina Rogatto

Open access · goldAbstract readCase ReportsTwin Study
In one paragraph

Article in Orphanet journal of rare diseases, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Sara Martoreli SilveiraNeogene Laboratory, CIPE, A. C. Camargo Cancer Center, São Paulo, Brazil. sara_martorelli@yahoo.com.brl.
Isabela Werneck da CunhaDepartment of Pathology, A.C. Camargo Cancer Center, São Paulo, Brazil. iwcunha@accamargo.org.br.
Fabio Albuquerque MarchiInstitute of Mathematics and Statistics, Inter-Institutional Program on Bioinformatics, USP, São Paulo, Brazil. fmarchibr@hotmail.com.
Ariane Fidelis BussoNeogene Laboratory, CIPE, A. C. Camargo Cancer Center, São Paulo, Brazil. ariane.b@ig.com.br.
Ademar LopesNucleus of Sarcoma, Department of Pelvic Surgery, A.C. Camargo Cancer Center, São Paulo, Brazil. ademar-lopes@uol.com.br.
Silvia Regina RogattoNeogene Laboratory, CIPE, A. C. Camargo Cancer Center, São Paulo, Brazil. silvia.rogatto@cipe.accamargo.org.br.
AC Camargo Hospital · BRInstitute of Bioinformatics · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundTesticular germ cell tumors (TGCTs) account for 1-2% of all tumors in young and middle aged men. A 75-fold increase in TCGT development has been reported for monozygotic (MZ) twins. Therefore, the occurrence of simultaneous tumors in MZ twins emphasizes the importance of genetic factors that influence the risk of developing these tumors. Genomic screening was performed for one family containing MZ twins with testicular germ cell tumors, in order to define alterations associated with risk of tumor development.

methodsCopy number alterations were evaluated using array-CGH (4x44K, Agilent Technologies) in one seminoma and one embryonal carcinoma (EC) from MZ twins. In addition, genomic alterations from the tumors and peripheral blood cells of the twins were compared to the parental genomes via their peripheral blood cells.

resultsEmbryonal carcinoma (Twin-1 t) presented a lower frequency of genomic alterations compared to the seminoma (Twin-2 t). One minimal common region of loss was observed in 9p13.1-p12 in the comparison between DNA from blood samples for Twin-1 and Twin-2. In this region is mapped the CNTNAP3 gene which was confirmed as involved in losses by qPCR. Comparative analysis of novel CNVs between the Twin-1 t and Twin-2 t showed five minimal common regions involving gain at chromosomes 12 (12p12.3-p11.1 and 12p13.33-p12.3), while losses were observed at 10p15.3-p15.2, 13q21.1-q21.2 and 15q11.1-q11.2. In addition, one exclusive rare copy number alteration was detected in Twin-1 t and Twin-2 t, and 19 novel alterations were identified in the Twin-2 t.

conclusionDistinct genomic profiles for MZ twins with phenotypically different TGCT were described. Of particular interest, 12p gains were detected exclusively in tumor samples. In peripheral blood samples, loss of 9p13.1-p12 was the unique novel CNV shared by the twins, confirming the involvement of CNTNAP3 gene in TGCTs development. Although similar CNV profiles were shared by both the peripheral blood and tumor samples of the twins, tumor-specific CNV loci were identified for seminoma and non-seminomatous tumors. These findings suggest the presence of de novo germline structural alterations and TGCT predisposition.

Indexed as

GenomicsGene Expression ProfilingGenetic TestingHumansMaleMembrane ProteinsNeoplasms, Germ Cell and EmbryonalNerve Tissue ProteinsTesticular NeoplasmsTwins, MonozygoticYoung AdultCNTNAP3 protein, humanMembrane ProteinsNerve Tissue Proteins

Identifiers

PMID25424124
PMCPMC4254261
OpenAlexW2117932860

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.